100 80 60 40 Figure S2 - PLOS

17.0 17.0 17.0 17.0 17.0 17.0 17.0 17.0 17.0 17.0 17.0 17.0 17.0 17.0 17.0 17.0 17.0 17.0 17.0 17.0 17.0 17.0 17.0 17.0 17.0 17.0 17.0 17.0 17.0 17.0 17.0 17.0 15.0 17.0 17.0 14.0 15.0 16.0 16.0 19.0 19.0

13.0 14.0 14.0 14.0 10.0 14.0 14.0 13.5 14.0 14.0 14.0 15.0 14.5 17.0 15.0 15.0 10.0

4.0 4.0 4.0 4.0 4.0 4.0 4.0

2.0 2.0 2.0 2.0 2.0 2.0 2.0 1.5 1.5 1.5 1.5 1.5 1.5 1.5 1.5 1.5 1.5 1.5 1.5 1.5 1.5 1.5 1.5 1.5 1.5 1.5 1.5 1.5 1.5 1.5 1.5 1.5 1.5 1.5 1.5 1.5 1.5 1.5 1.5 2.0 2.0 2.0 2.0 1.5 1.5 1.5 2.0 2.0 2.0 2.0 2.0 2.0 2.0 2.0 2.0 2.0 2.0 2.0 2.0 2.0 2.0 2.0 2.0 2.0 2.0 2.0 2.0 2.0 2.0

4.0 4.0 4.0 4.0 4.0 4.0 4.0 4.0 4.0 4.0 4.0 4.0 4.0 4.0 4.0 4.0 4.0 4.0 4.0 4.0 4.0 4.0 4.0 4.0 4.0 4.0 4.0 4.0

4.0 5.0 5.0 4.0 5.0 5.0 4.0 4.0 4.0 4.0 4.0 4.0 4.0 4.0 4.0 4.0 4.0 4.0 5.0 4.0 4.0 4.0 5.0 4.0 4.0 4.0 4.0 4.0 4.0 4.0

8.0 8.0 7.5 8.0 8.0 8.0 8.0 8.0 8.0 8.0 8.0 8.0 8.0 8.0 8.0 8.0 8.0 8.0 8.0 8.0 8.0 8.0 8.0 8.0 8.0 8.0 8.0 8.0 8.0 8.0 8.0 8.0 8.0 8.0 8.0 8.0 8.0 8.0 8.0 8.0 8.0 8.0 8.0 8.0 8.0 7.0 8.0 7.0 7.0 7.0 7.5 7.5 7.5 7.5 7.5 7.5 9.0 9.0 8.0 9.0 9.0 9.0 9.0

8.0 8.0 8.0 8.0 8.0 8.0 8.0 8.0 8.0 8.0 8.0 8.0 8.0 8.0 8.0 8.0 8.0 8.0

.is310 .is386 .is332 .is316 .is330 .is359 .is376 .is321 .is339 .is388 .is365 .is372 .is315 .is317 .is324 .is333 .is337 .is344 .is345 .is346 .is347 .is348 .is349 .is350 .is352 .is363 .is364 .is366 .is367 .is368 .is374 .is377 .is309 .is341 .is353 .is355 .is369 .is371 .is373 .is379 .is380 .is381 .is319 .is360 .is357 .is362 .is378 .is328 .is343 .is383 .is313 .is320 .is338 .is384 .is382 .is340 .is336 .is370 .is307 .is308 .is311 .is331 .is351 .is318 .is361 .is342 .is322 .is323 .is358 .is314 .is356 .is387 .is312

7.0 9.0 8.0 8.0 8.0 8.0 8.0 7.0 8.0

8.0 8.0 8.0 8.0 8.0 8.0 8.0 8.0 8.0 8.0 8.0 8.0 8.0 8.0 8.0 8.0 8.0 8.0 8.0 8.0 8.0 8.0 8.0 8.0 8.0 8.0 8.0 8.0 8.0 8.0 8.0 7.0 7.0 7.0 7.0 7.0 7.0 8.0 8.0 8.0 8.0 8.0 8.0 8.0 8.0 8.0 8.0 7.0 7.0 7.0 8.0 8.0 8.0 8.0

ST 471 . . 114 621 114 . 187 187 . 187 187 187 68 68 469 68 187 468 68 68 68 378 187 187 68 68 187 . . 68 378 242 187 187 187 187 187 93 187 187 187 470 395 467 60 460 39 39 226 . . . . . . . 466 472 473 407 407 367 464 464 461 463 . 462 465 465 710

Sg 5 Sg5 Sg4 Sg6 Sg5 Sg6 Sg5 Sg6 Sg6 Sg8 Sg6 Sg6 Sg6 (T H U N D E R B A Y) Sg6 (S U D B U R Y) Sg6 Sg10 Sg6 Sg6 Sg8 Sg6 Sg6 Sg6 Sg4 Sg6 Sg6 Sg6 Sg6 Sg8 Sg8 Sg4-8 Sg6 Sg4 Sg6 Sg6 Sg6 Sg6 Sg6 Sg6 Sg3 Sg6 Sg6 Sg6 Sg10 Sg3 Sg5 Sg6 Sg5 Sg2 Sg2 Sg8 Sg4 Sg8 Sg8 Sg8 Sg8 Sg4 Sg4 Sg8 Sg8 Sg12 Sg6 Sg6 (M IS S IS S A U G A) Sg6 Sg3 Sg2-3 Sg6 Sg10 Sg10 Sg3 Sg3 Sg3 Sg5 Sg8

Large cluster

16.0 17.0 17.0 17.0 17.0 17.0 17.0

2.0

MLVA

Subcluster 1

16.0

Sg03

Sg31

1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 2.0 2.0 2.0 1.0 1.0 1.0 1.0 1.0 1.0 3.0 3.0 3.0 3.0 2.0 2.0 2.0 2.0 2.0 4.0 3.0 3.0 1.0 4.0 4.0 2.0 1.0

Sg01

Sg34

2.5 2.5 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 4.0 4.0 4.0 4.0 3.0 3.0 3.0 3.0 4.0 4.0 4.0 4.0 1.0 3.0 2.0 2.0 2.0 2.0 4.0 4.0 2.0 2.0 2.0 3.0 2.0 2.0 2.0 2.0 2.0 2.0 2.0

Sg19

Sg33

8.0 8.0 11.0 3.0 3.0 3.0 3.0 3.0 3.0 3.0 3.0 3.0 3.0 3.0 3.0 3.0 3.0 3.0 3.0 3.0 3.0 3.0 3.0 3.0 3.0 3.0 3.0 3.0 3.0 3.0 3.0 3.0 3.0 3.0 3.0 3.0 3.0 3.0 3.0 3.0 3.0 3.0 13.0 12.0 3.0 13.0 14.0 6.0 3.0 14.0 16.0 16.0 16.0 16.0 18.0 15.0 24.0 24.0 21.0 11.0 18.0 18.0 18.0 18.0 18.0 17.0 28.0 23.0 26.0 23.0 23.0 23.0 19.0

Sg17

Sg35

3.0 3.0 3.0 11.0 11.0 11.0 11.0 9.0 10.0 10.0 14.0 14.0 11.0 11.0 11.0 11.0 11.0 11.0 11.0 11.0 11.0 11.0 11.0 11.0 11.0 11.0 11.0 11.0 11.0 11.0 11.0 11.0 10.0 10.0 10.0 10.0 10.0 10.0 10.0 10.0 10.0 10.0 10.0 10.0 10.0 10.0 7.0 12.0 8.0 16.0 12.0 12.0 12.0 12.0 12.0 10.0 8.0 8.0 10.0 8.0 10.0 10.0 8.0 7.0 7.0 11.0 7.0 7.0 4.0 4.0 4.0 4.0 9.0

Molecular types Sero g ro u ps

Subcluster 2

100

MLVA Markers Sg13

80

60

40

Figure S2