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Additional file 3: Supplementary figures S1, S2, S3 and S4. T. Lipniacki et al. Fig. S1. Pulse and persistent stimulation by a high TNFa dose (10ng/ml). Amplitude ...
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Expansion of M-MDSC by dexmedetomidine is inhibited by yohimbine. (A-B) CD11b. +. CD33. +. HLA-DR. â cells (3 Ã 10. 4 cells/well) isolated from lung cancer ...
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Luis M. Vaschetto, Raúl E. González-Ittig, Julia Vergara and Luis E. Acosta. Figure S1. Bayesian 50% majority rule consensus tree based on COI sequences ...
For all simulations in the main text we use the single-compartment aEIF model. Using the dynamic IV method (see Materials and Methods), we estimated the ...
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Figure S1: Domain organization in Heh2 and Src1 proteins. The domain architectures of the homologs of Heh2 and Src1 proteins are shown in representative organisms from each eukaryotic supergroup. MSC domain is shown in pink and the N-terminal HeH/LEM domain is shown in green. All maps are drawn to scale.
Figure S2: Domain organization in Hmg1 & Hmg2 proteins. Homologs of Hmg1 and Hmg2 proteins are shown in representative organisms. The domains found in each of the homologs are shown in different colors. HMG-CoA_red (green), sterol-sensing (purple), HPIH (red). The homolog in Thalassiosira pseudonana with HMG-CoA_red domain is partial. All maps are drawn to scale.
Figure S3: Domain organization in the SUN domain proteins. The domain architectures of the homologs of SUN domain containing proteins A) Mps3 (C-terminal SUN) and B) Slp1 (midSUN) are shown in representative organisms. Sad1_UNC domain is shown in yellow. The additional MRP domain found in Mps3 homolog of human is shown in dark pink.
Figure S4: Non-linearly conserved proteins. The occurrence of non-linearly conserved proteins across supergroups is depicted. The black filled rectangles represent the presence of the protein in the respective supergroup. Fungi and Metazoa, belonging to Opisthokonta, are shown separately.
Figure S5: Motifs identified in Saccharomycetes specific proteins. The sequence logos of the motifs identified in A) Nvj1, B) Prm3 and C) Esc1 are shown. Shown below is the scaled map of the S. cerevisiae protein indicating the position of the motif.
Functional class Chromatin organisation Chromatin organisation Chromatin organisation Chromatin organisation Chromatin organisation Chromatin organisation Chromatin organisation Nuclear envelope homeostasis Nuclear envelope homeostasis Nuclear envelope homeostasis Nuclear envelope homeostasis Nuclear envelope homeostasis Nuclear envelope homeostasis Nuclear envelope homeostasis Nuclear envelope homeostasis Gene Regulation Gene Regulation Gene Regulation Gene Regulation Gene Regulation Gene Regulation Gene Regulation Transport related Transport related Transport related Transport related Transport related Transport related Others Others Others Others Others Others Others Others Others Others Others Others Others Others
Localisation Nuclear periphery Nuclear periphery INM INM INM Nuclear periphery Nuclear periphery ER & ONM ER & ONM ER & ONM ER & NE ER & NE ER & NE ER & NE ER & NE Nuclear pore ER & INM ER & NE Nuclear periphery INM INM INM Nuclear pore Nuclear pore Nuclear pore Nuclear pore NE & ER NE & ER NE INM INM ER & ONM ER & ONM ER & ONM NE INM Nuclear periphery ER & NE NE INM NE NE
43 44 45
Prm3 Cos8 Uip3
Others Others Others
ONM NE NE
The proteins present at the nuclear envelope of Saccharomyces cerevisiae are listed along with the functional class to which they belong and their specific localization.
Table S2: List of organisms used in the study S. No
The table includes the list of organisms chosen for this study along with the phylum/class/common name, the eukaryotic supergroup to which the organism belongs and the date on which the proteomes were downloaded.
