Additional file 6 - Figure S3. Transposable elements and simple ...

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SIMPLE REPEATS. Additional file 6 - Figure S3. Transposable elements and simple repeats located within the PIGT and ELP/CTI genes and flanking regions.
DNA transposon LTR retrotransposon

0

10

Endogenous retrovirus Non-LTR retrotransposon

CH2-2A

BOVA2

AFROSINE2 L1ME3A MIRc

MER21C

L2B L1ME3A MIRc

MLT1H_I

MIR3 MER33 AluJ

MER3 MER5A L2B L2 MER5B

20

TRANSPOSABLE ELEMENTS

Interspersed repeat

L2B

L2B

MIRb

MER5A1

MER5A MIR3 SINEC_c1 MER3 L1M7_5end MIR MER68A MIRb

MIRc

L1MB7 SINEC_c1

L2

L2B

L2B L2

MER3 SINEC2A1_CF

L1MC5

MIRb

CHARLIE8A

MER21C MIR3

Dog

MER5A1

MIR MER77

MER33

MIRb L1ME5 MER5B

L1MB3

L2B L2

L2B L2

MER3

CHARLIE15a

L1MC5

MIRb

MIRb

AluJ

CHARLIE8

Horse

CHARLIE8 AluJ

MIRc

MIR3

CHARLIE24

DNANA5_MD

L1-4A_MD THER2_MD

MIR3

MIRc RTESINE2

ERV46

MIR3 L3b_3end MIR3

THER1_MD MdoRep1 MIRc

MIR3 MIR3

LTR14_MD

L2-2_MD

? kbp

L1ME3A

L1-2_LA MIRc

MIR3 L1M7_5end SINE2-2_BT

MER68A

MIR3 MER33 MIR AFROSINE2 MER77

MIR

MER3 MER5A L2B L2

CHARLIE15a

L1-3_LA

MIRc

MIRb

L2B

Elephant

MIRb L1ME5 BOVA2

SINE2-2_BT

MER3 MIRb L2B L2

L1-2_BT

MIRb

CHARLIE8A

CHARLIE8A

ELP/CTI

30

MIR3

THER2_MD MIRc

MIR3 MIR3 SINE1_MD

SINE1_MD MAR1_MD MIRc

L3b_3end

L1-1B_MD

L1-4_MD MIRb THER1_MD MIRc MIR3 MdoRep1 LTR93b_MD

THER1_MD

SINE1_MD

MIR3 MdoRep1 L2-2_MD

SINE1_MD

MIR3

MIR3

DNANA5_MD MIRc

PIGT

Opossum

Tammar

Human

Cow

kbp

SIMPLE REPEATS

Simple repeat

Additional file 6 - Figure S3. Transposable elements and simple repeats located within the PIGT and ELP/CTI genes and flanking regions