Additional file 9: Lists of the cell cycle related ...

Additional file 9: Lists of the cell cycle related transcripts among the selection according to the value of the index calculated either under the crossing hazard effect or the PH model. (NPH)

AffyID 221326-s-at 209661-at 208228-s-at 206003-at 225237-s-at 1562139-a-at 206113-s-at 200796-s-at 221281-at 207319-s-at 213023-at 214908-s-at 222563-s-at 1555346-at 219944-at 239223-s-at 222540-s-at 203639-s-at 224010-at 215739-s-at 206235-at 243999-at 211103-at 211401-s-at 212308-at

Gene Symbol TUBD1 KIFC3 FGFR2 CEP135 MSI2 FOXP2 RAB5A MCL1 SRC CDC2L5 UTRN TRRAP TNKS2 CDC20B CLIP4 FBXL20 RSF1 FGFR2 ANAPC11 TUBGCP3 LIG4 SLFN5 MYO7A FGFR2 CLASP2

Table 1: Cell-cycle related genes selected according to D0 UniGene Name tubulin, delta 1 kinesin family member C3 fibroblast growth factor receptor 2 centrosomal protein 135kDa musashi homolog 2 (Drosophila) forkhead box P2 RAB5A, member RAS oncogene family myeloid cell leukemia sequence 1 (BCL2-related) v-src sarcoma (Schmidt-Ruppin A-2) viral oncogene homolog (avian) cell division cycle 2-like 5 (cholinesterase-related cell division controller) utrophin transformation/transcription domain-associated protein tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase 2 cell division cycle 20 homolog B (S. cerevisiae) CAP-GLY domain containing linker protein family, member 4 F-box and leucine-rich repeat protein 20 remodeling and spacing factor 1 fibroblast growth factor receptor 2 anaphase promoting complex subunit 11 tubulin, gamma complex associated protein 3 ligase IV, DNA, ATP-dependent schlafen family member 5 myosin VIIA fibroblast growth factor receptor 2 cytoplasmic linker associated protein 2

Cytoband chr17q23.1 chr16q13-q21 chr10q26 chr4q12 chr17q22 chr7q31 chr3p24-p22 chr1q21 chr20q12-q13 chr7p13 chr6q24 chr7q21.2-q22.1 chr10q23.3 chr5q11.2 chr2p23.2 chr17q12 chr11q14.1 chr10q26 chr17q25.3 chr13q34 chr13q33-q34 chr17q12 chr11q13.5 chr10q26 chr3p22.3

(NPH)

D0 37.9% 35.9% 34.5% 34.4% 34.1% 34.0% 33.7% 32.9% 32.7% 32.5% 32.1% 32.1% 32.1% 31.9% 31.8% 31.6% 31.1% 31.0% 31.0% 30.9% 30.8% 30.5% 30.4% 30.1% 29.8%

(PH)

AffyID 226765-at 1566851-at 202257-s-at 203348-s-at 210356-x-at 205861-at 233251-at 216609-at 214114-x-at 202252-at 202810-at 202676-x-at 229664-at 224434-s-at 210187-at 210111-s-at

Gene Symbol SPTBN1 TRIM42 CD2BP2 ETV5 MS4A1 SPIB STRBP TXN FASTK RAB13 DRG1 FASTK MAPK8 MORG1 FKBP1A KLHDC10

Table 2: Cell-cycle related genes selected according to D0 UniGene Name Cytoband CDNA clone IMAGE:3897439 chr2p21 tripartite motif-containing 42 chr3q23 CD2 (cytoplasmic tail) binding protein 2 chr16p11.2 ets variant 5 chr3q28 membrane-spanning 4-domains, subfamily A, member 1 chr11q12 Spi-B transcription factor (Spi-1/PU.1 related) chr19q13.3-q13.4 Chromosome 9 open reading frame 45, mRNA chr9q33.3 Full length insert cDNA clone YI46D09 chr9q31 Fas-activated serine/threonine kinase chr7q35 RAB13, member RAS oncogene family chr1q21.2 developmentally regulated GTP binding protein 1 chr22q12.2 Fas-activated serine/threonine kinase chr7q35 mitogen-activated protein kinase 8 chr10q11.22 mitogen-activated protein kinase organizer 1 chr19p13.13 FK506 binding protein 1A, 12kDa chr20p13 KIAA0265 gene chr7q32.2

(PH)

D0 41.0% 37.1% 36.3% 35.8% 34.3% 34.2% 31.5% 31.4% 30.9% 30.9% 30.7% 30.7% 30.5% 30.3% 29.9% 29.7%