Jun 13, 2018 - nization (see de Wit and de Laat [2012] for a review). With the development of high ..... Nat Struct Mol Biol, 18(1):107â114, Jan 2011. doi:.
Aug 24, 2017 - The package is an R interface for HDF5. On the one hand it implements R interfaces to many of the low lev
Caenorhabditis elegans (Worm) full genome (UCSC version ce2). Description.
Caenorhabditis elegans (Worm) full genome as provided by UCSC (ce2, Mar.
Feb 27, 2014 - records, and are described in greater detail earlier in the course. The center performing the ... appropriate for the data under analysis. A typical ...
Jul 30, 2010 - Avoid R programming pitfalls â very significant benefits. â» Parallel evaluation, especially 'embarras
Oct 18, 2010 - Tim J P Hubbard, Richard Durbin, Simon Tavare, and Stephan Beck. A bayesian deconvolution strategy for immunoprecipitation-based dna ...
Martin T. Morganâ. 27-28 February 2014 ..... [11] Ali Mortazavi, BrianËA Williams, Kenneth McCue, Lorian Schaeffer, and Barbara Wold. Mapping and quanti-.
Jul 30, 2010 - These brief exercises are meant to illustrate some common obstacles to efficient. R programming. The idea
R topics documented: genus . ... A list of files if file name is missing, otherwise a data.frame with class c("tbl_df",
Jul 30, 2010 - This almost trivial change has a big influence on performance, without changing the result: ... [1] TRUE.
Maintainer Terry M Therneau . Author Terry M
Therneau [aut, cre],Hart Stephen [ctb]. R topics documented: rnapower .
Package 'SSPA'. January 12, 2014. Type Package. Title General Sample Size
and Power Analysis for Microarray and Next-Generation Sequencing Data.
Title Piecewise Linear Regression Splines (PLRS) for the association between
DNA copy number and gene expression. Author Gwenael G.R. Leday. Maintainer
...
Package 'oligoClasses'. February 28, 2014. Version 1.24.0. Title Classes for high
-throughput arrays supported by oligo and crlmm. Author Benilton Carvalho ...
Jun 12, 2013 ... Maintainer Alejandro Quiroz-Zarate . Description
R package providing functions to perform geneset significance ...
Jul 30, 2010 - Big data: genome-wide association studies, re-sequencing, . . . . â» Long .... An R analysis can make mu
Sep 21, 2011 - human Affymetrix expert-curated datasets from GEO. Jonatan Taminau 1,â .... ween the gene expression omnibus (GEO) and bioconductor.
usermanual.pdf. 2. Zong C, Lu S, Chapman AR, Xie XS. Genome-wide detection of single-nucleotide and copy-number variations of a single human cell.
Jun 6, 2010 - a bioinformatics resource developed by the National Institute of Allergy and. Infectious ..... sity of Pittsburgh, and Windber Research Institute.
Jul 18, 2018 - Grant information: The funders ..... Thanks to Steph Locke (https://github.com/stephlocke) and Dave Parr (https://github.com/DaveRGP) from the.
Feb 10, 2013 - 3.3 Bioconductor packages for high-throughput sequence analysis . .... require high-speed internet access
Jan 15, 2011 - Suppose we have two data frames containing high-throughput data on the ... may correspond to a standard identifier set, such as gene name, ...
BSgenome.Celegans.UCSC.ce2. January 17, 2014. BSgenome.Celegans.UCSC
.ce2. Full genome sequences for Caenorhabditis elegans (UCSC version ce2).
BSgenome.Celegans.UCSC.ce2 November 14, 2017
BSgenome.Celegans.UCSC.ce2 Full genome sequences for Caenorhabditis elegans (UCSC version ce2)
Description Full genome sequences for Caenorhabditis elegans (Worm) as provided by UCSC (ce2, Mar. 2004) and stored in Biostrings objects.
Note This BSgenome data package was made from the following source data files: chromFa.zip from http://hgdownload.cse.ucsc.edu/goldenPath/ce2/bigZips/
See ?BSgenomeForge and the BSgenomeForge vignette (vignette("BSgenomeForge")) in the BSgenome software package for how to make a BSgenome data package.
Author(s) The Bioconductor Dev Team
See Also • BSgenome objects and the available.genomes function in the BSgenome software package. • DNAString objects in the Biostrings package. • The BSgenomeForge vignette (vignette("BSgenomeForge")) in the BSgenome software package for how to make a BSgenome data package. 1
