Chr02(Mb) Chr03(Mb) Chr04(Mb) Identical homozygous alleles to

Solyc02g090890 (hp-3)

30 30

40 40 40

50 50 50

60 60 60

Heterozygous alleles No data in GoldenGate Different homozygous alleles to Heinz 1706-BG

No data by experimental errors

Solyc04g074180 (cry1a)

Solyc03g114600 (asc)

Solyc02g077390 (s)

30

Solyc04g076850 (e)

Solyc02g081670 (an)

(hp-2)

20 Solyc04g051510 (cu-3)

(au)

Solyc01g008930

Solyc02g021650 (hp-1)

Solyc03g031860 (r)

Solyc01g056340

20

[

Identical homozygous alleles to Heinz 1706-BG

c4 c3 c2 c1 All c4 c3 c2 c1

c4 c3 c2 c1 All c4 c3 c2 c1

c4 c3 c2 c1 All c4 c3 c2 c1

c4 c3 c2 c1 All c4 c3 c2 c1

Chr04(Mb) [ [

90 10

[

80

[

70

Chr03(Mb) [ [

40 10

[

30

[

20

Chr02(Mb) [ [

10

[

[

[ [

[

Chr01(Mb)

10

20

10 10

20 20 20 20

30 30 30

40 40

50 50

60 60

Solyc06g008300 (cf2)

c4 c3 c2 c1 All c4 c3 c2 c1

c4 c3 c2 c1 All c4 c3 c2 c1

Chr08(Mb)

[

[ [

60

[

Solyc06g074240 (B)

c4 c3 c2 c1 All c4 c3 c2 c1

Chr07(Mb)

[

[ [

10

40

[

10

Solyc05g013280 (pfr)

Chr06(Mb)

[

[ [

50

[

40

[

[ [

[

30 c4 c3 c2 c1 All c4 c3 c2 c1

Chr05(Mb)

50

60

Solyc10g081650 (t)

50 50

Solyc11g011990 (ghost)

40

Solyc09g010080 (brix9-2-5)

Solyc09g005080 (Ve2)

Solyc10g044670 (phyA)

Solyc11g011260 (pro)

c4 c3 c2 c1 All c4 c3 c2 c1

c4 c3 c2 c1 All c4 c3 c2 c1

30

10

20

30

40

50

60

c4 c3 c2 c1 All c4 c3 c2 c1

Chr12(Mb)

[

40

20

[ [

30

10

[

40

Chr11(Mb)

[

20

[ [

10

[

Solyc09g075440 (Nr)

Chr10(Mb)

[

60 [ [

30

[

20

[

[ [

[

10 c4 c3 c2 c1 All c4 c3 c2 c1

Chr09(Mb)