Department of Systems Biology and Bioinformatics, University of Rostock, Rostock, Germany .... and Cancer Research, Rostock University .... Mohit Kumar Jolly.
Apr 28, 1999 - see (Fontana et al., 1993a) and (Hofacker et al., 1994) for details. ...... Fontana, W., Konings, D. A. M., Stadler, P. F. and Schuster, P. Statistics of ...
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Jul 12, 2010 - Leah Krubitzer and Sarah Karlen (UC Davies), and Helen Stolp, .... Griffiths-Jones S, Humphray SJ, Hyland C, Scott CE, Tang H, Taylor RG,.
Jul 12, 2010 - selected from a list of mouse long intergenic noncoding RNA (lncRNA) loci that generally .... putative promoter regions (Figures 2b,c, 3b,c and 4b,c; ...... Received: 4 March 2010 Revised: 17 May 2010 Accepted: 12 July 2010.
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RNA Biology provided a good opportunity to overview the state of the art in this .... Zirbel (Bowling Green State University, USA) described. JAR3D, a set of ...
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Sep 2, 2014 - Nasopharyngeal Carcinoma and Their Prognostic Value ... Nasopharyngeal Carcinoma, Sun Yat-Sen University Cancer Center, 651 Dongfeng ...
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Editor: Philip E. Bourne, University of California San Diego, United States of America. Published October 30, 2009. Copyright: ... a bash shell script that performs multiple .... learning environment (VLE) in the bioin- formatics field. ... pdf.. 2.
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Thomas D Griffin, Stephen K Boyer, Alfredo Alba, Keke Cai. ... FM-GA and CM-GA for Gene Microarray Analysis by Lily R. Liang, Rommel A. Benites Palomino, ...
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Book title: Computational Biology of Non-Coding RNA in Biomedicine Editors: Xin Lai1, Shailendra Gupta2, Julio Vera1 1
Laboratory of Systems Tumour Immunology, Department of Dermatology, Friedrich-Alexander-University of Erlangen-Nürnberg
(FAU) and Universitätsklinikum Erlangen, Erlangen, Germany 2
Department of Systems Biology and Bioinformatics, University of Rostock, Rostock, Germany
Series editor: John M. Walker Series: Methods in Molecular Biology (www.springer.com/series/7651) For almost 30 years, biological scientists have come to rely on the research protocols and methodologies in the critically acclaimed Methods in Molecular Biology series. The series was the first to introduce the step-by-step protocols approach that has become the standard in all biomedical protocol publishing. Each protocol is provided in readily-reproducible step-by-step fashion, opening with an introductory overview, a list of the materials and reagents needed to complete the experiment, and followed by a detailed procedure that is supported with a helpful notes section offering tips and tricks of the trade as well as troubleshooting advice. These hallmark features were introduced by series editor Dr. John Walker and constitute the key ingredient in each and every volume of the Methods in Molecular Biology series. Tested and trusted, all protocols from the series are indexed in Pub Med, comprehensive and reliable. Publisher: Springer Nature Estimated time for publication: summer 2018
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Preliminary table of content Chapters 1. Overview of ncRNA biology The role of ncRNAs in extracellular vesicles secreted by tumor cells The p73-governed miRNA landscape: translating bioinformatics approaches to therapeutic solutions for metastasis ncRNAs in inflammatory and infectious diseases 2. Bioinformatics of ncRNA biology Computational methods for annotation and functional analysis of circular RNAs Methods to study long non-coding RNA expression and dynamics in zebrafish using RNA sequencing Workflow development strategies for the functional characterization of ncRNAs Understanding miRNA-mRNA interactions through reproducible RNA high throughput analysis Computational resources for identifying functional miRNAs regulation and their interactome ncRNA editing: functional characterization and computational resources Computational prediction of functional microRNA – mRNA interactions Non-coding RNAs databases: current status and trends 3. Network biology of ncRNA Controllability methods for identifying associations between critical control ncRNAs and human diseases Analysis of regulatory network topology reveals functionally distinct classes of ncRNAs Computational analysis of the human cis-antisense gene pairs, miRNAs and their transcription regulation patterns Integration of miRNA and mRNA Expression Data for Understanding Etiology of Gynecologic Cancers
Corresponding Author
Institute
Country
Florian S. Dreyer
University Hospital of Erlangen
Germany
Brigitte M. Pützer
Rostock University Medical Centre
Germany
Bernd Schmeck
Phillips-University of Marburg
Germany
Vinod Scaria Sridhar Sivasubbu
CSIR-Institute of Genomics and Integrative Biology CSIR-Institute of Genomics and Integrative Biology
India India
Markus Wolfien
University of Rostock
Germany
Andrea Bagnacani
University of Rostock
Germany
Nigita Giovanni
CSIR-Institute of Microbial Technology Ohio state University
Jens Allmer
Wageningen University and Research
Netherland
Alan Mitchell Durham
Cidade Univesitária
Brazil
Jose C. Nacher
Toho University
Japan
Annalisa Marsico
Free University of Berlin
Germany
Manoj Kumar
Yuriy Orlov Sushmita Paul
Siberian Branch of the Russian Academy of Sciences Indian Institute of Technology Jodhpur
India USA
Russia India Page | 2 /3
4. Mathematical modelling of ncRNA regulation Quantitative characteristics of ncRNA regulation in gene regulatory networks Kinetic modelling of competition and depletion of shared miRNAs by competing endogenous RNAs Modelling ncRNA-mediated circuits in cell fate decision Modeling ncRNA-mediated regulation of the G1 checkpoint in the mammalian cell cycle Modelling miRNA regulation in melanoma using Computational Approaches
Mohit Kumar Jolly
Rice University
USA
Andrea De Martino
Sapienza University of Rome
Italy
Xiaojun Tian
Arizona State University University of the Philippines Los Banos
