Environ. Eng. Res. Vol. 12, No. 4, pp. 136 ~147, 2007 Korean Society of Environmental Engineers
EFFECTS OF THE HERBICIDE, BUTACHLOR, ON NITROGEN FIXATION IN PHOTOTROPHIC NONSULFUR BACTERIA 1
Lee, Kyung Mi, Jaisoo Kim , and Hyun Soon Lee
*
Department of Biological Sciences, Sungkyunkwan University, Suwon 440-746, Korea 1 Department of Life Science, Kyonggi University, Suwon 443-760, Korea (received January 2007, accepted September 2007)
Abstract:In an effort to identify possible microbes for seeking bioagents for remediation of herbicidecontaminated soils, seven species of phototrophic nonsulfur bacteria (Rhodobacter capsulatus and sphaeroides, Rhodospirillum rubrum, Rhodopseudomonas acidophila, blastica and viridis, Rhodomicrobium vannielii) were grown in the presence of the herbicide, butachlor, and bacterial growth rates and nitrogen fixation were measured with different carbon sources. Under general conditions, all species showed 17-53% reductions in growth rate following butachlor treatment. Under nitrogen-fixing conditions, Rb. capsulatus and Rs. rubrum showed 1-4% increases in the growth rates and 2-10% increases in nitrogen-fixing abilities, while the other 5 species showed decreases of 17-47% and 17-85%, respectively. The finding that Rp. acidophila, Rp. blastica, Rp. viridis and Rm. vannielii showed stronger inhibitions of nitrogenase activity seems to indicate that species in genera Rhodobacter and Rhodospirillum are less influenced by butachlor than those in Rhodopseudomonas and Rhodomicrobium in terms of nitrogen-fixing ability. Overall, nitrogenase activity was closely correlated with both growth rate and glutamine synthetase activity (representing nitrogen metabolism). When the carbon sources were compared, pyruvate (three carbons) was best for all species in terms of growth rate and nitrogen fixation, with malate (four carbons) showing intermediate values and ribose (five carbons) showing the lowest; these trends did not change in response to butachlor treatment. We verified that each of the 7 species had a plasmid (12.2~23.5 Kb). We found that all 7 species could use butachlor as a sole carbon source and 3 species were controlled by plasmid-born genes, but it is doubtful whether plasmid-born genes were responsible to nitrogen fixation. Key Words:Butachlor, Herbicide, Nitrogen fixation, Plasmid, Purple nonsulfur bacteria
INTRODUCTION 1 Nitrogen fixation by phototrophic nonsulfur bacteria was first demonstrated through the study of hydrogen production by Rhodospirillum rubrum,1) and subsequently shown in other phototrophic bacteria. However, although many phototrophic bacteria are able to fix nitrogen, the associated nitrogenases have been studied in only a few species.2-6) The effects of herbicides on nitro†
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gen fixation in cyanobacteria are of interest to researchers because this process is vital to the fertility of the rice fields.7-10) However, only a few studies have examined the effect of herbicides on nitrogen fixing phototrophic nonsulfur bacteria.11) Butachlor (2-chloro-2’, 6’-diethyl-N (butoxymethyl) acetanilide; commercial name Machete), alachlor and propachlor belong to the chloroacetanilide chemical family and were used extensively in the 1980s and 1990s for killing weeds in rice-fields, especially in Korea, Japan and other Southeast Asian countries. There have
Effects of the Herbicide, Butachlor, on Nitrogen Fixation in Phototrophic Nonsulfur Bacteria
been reports of the negative effects of butachlor on cyanobacteria, Rhizobium and Nostoc; these effects include mutagenesis, as well as inhibition of growth, photosynthesis and nitrogenase activity.12) In contrast, the growth and aerobic nitrogen fixing ability of butachlor-treated Gloeocapsa species (oxygen-utilizing diazotrophs) were shown to be possible due to plasmid-born herbicide resistance genes.12,13) Nitrogen fixation concurrent with oxygen or ammonia treatment was studied using phototrophic nonsulfur bacteria and diazotrophic bacteria,13) whereas Habte and Alexander14) showed that herbicide-treated Chromatium and Thiospirilum showed increased nitrogen fixation ability, while cyanobacteria showed the opposite in lowland rice culture. Butachlor is generally removed from the soil through volatilization and decomposition by light15) or soil microorganisms. The herbicide, chloroacetanilide, was degraded 50 times faster by microorganisms than by light or volatilization, indicating that some microorganisms could use herbicide as a carbon source.7,8,10,16,17) Likewise, microorganisms capable of using alachlor or propachlor as a carbon source were found in sewage and lake water. Madigan et al.18) and Serebrayakova et al.19) examined the nitrogenase activities of nonsulfur photosynthetic bacteria, and the studies have examined the relationships among nitrogen fixation, plasmids and genes.5,20-22) This study examined the influence of butachlor on the nitrogen-fixing ability and growth rates of phototrophic nonsulfur bacteria, and then further assessed the utilization of butachlor as a carbon source, and the plasmids involved in butachlor degradation.
MATERIALS AND METHODS Microorganisms All strains were purchased from American Type Culture Collection (ATCC, USA) and Deutsche Sammulung für Mikroorgnismen (DSM, Germany), except Rhodospirillum rubrum KS-301, which was isolated in our laboratory from lake water using an anaerobic enrichment culture
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method. Those are Rhodobacter capsulatus DSM 1710, Rhodobacter sphaeroides ATCC 17023, Rhodospirillum rubrum KS 301, Rhodopseudomonas acidophila ATCC 25092, Rhodopseudomonas blastica ATCC 33485, Rhodopseudomonas viridis DSM 133, Rhodomicrobium vannielii DSM 162.
Chemical Butachlor (2-chloro-2’, 6’-diethyl-N (butoxymethyl) acetanilide; commercial name, Machete) with purity of 98.7% was purchased from the Korean Agriculture Chemical Company (Seoul, Korea).
Media and Growth Conditions All strains were grown in Ormerod medium 4) supplemented with 0.3% of the indicated carbon source at pH 7.0, except that Rhodopseudomonas (Rp.) acidophila and Rhodomicrobium (Rm.) vannielii were kept at pH 5.6, and the media for Rp. blastica was supplemented with 0.4% NaCl. For experiments testing growth in dinitrogen gas, the (NH 4)2SO 4 and yeast extract in the Ormerod medium (basal medium) was replaced with biotin (8 μg/mL) and a 50 mL/min flow of nitrogen gas. To study the utilization of butachlor as a sole carbon source, 10-2 to 10-5 M of butachlor was added to the basal medium without yeast extract. Bacteria were cultured in screw cap tubes (10 mL) or glass bottles (30 or 50 mL) under 2000 Lux illumination at 28 ± 2°C. For growth under nitrogen gas, a suction flask was filled with 50 ml of medium and nitrogen gas was passed through a high temperature copper tube for complete elimination of oxygen. Growth of the microorganisms was determined by measuring optical density (OD) at 660 nm and calculating the dry weight according to Hilmer and Gest.23) The specific growth rate (μ, unit = h-1) was calculated from the equation of Schlegel.24) For protein estimation, the Lowry method 25) was used with bovine serum albumin employed as the standard. The cells were disrupted by a sonicator.
Ammonium Estimation For estimation of ammonium production, 10
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mL of each cell culture was digested with 0.1 mL of digestion solution (conc. H 2SO 4, 1 L: potassium sulfate, 100 g; selenium, 1 g) at 300°C for 1 hour until the mixture became transparent. After centrifugation for 10 min, 50 μL of supernatant was used for measuring the absorbance at 625 nm according to the method of Chaney and March.26) NH 4Cl was dried for 24 hours at 100°C was used as the standard.
Enzyme Assays Nitrogenase activity was determined by measurement of acetylene reduction, as described.18,27) Briefly, cell cultures were centrifuged, and each pellet was washed with nitrogen-free medium and then suspended in Ormerod medium without a nitrogen source. Two ml of this cell suspension was inoculated into a tube, sealed with suba seal (No. 17), treated with argon gas for 10 min and then treated with acetylene gas (calcium carbide + H 2O) up to 10% (v/v). The cells were cultured under 10,000 Lux at 30°C for 60 hours and the production of ethylene gas (0.5-1 mL) was measured by gas chromatography (Varian 3700, CA, USA). In order to assay the activity of glutamine synthetase, γ-glutamylhydroxamate formation was determined as described by Shapiro and Stadtman28) and Bender et al.29)
Preparation of Plasmids Plasmids from seven strains of phototrophic nonsulfur bacteria were prepared by the rapid method described by Birnboim and Doly30) and Ish-Horowitz and Burke,31) which allows isolation of undenatured ccc-plasmid DNA between pH 12-12.5 in SDS alkaline solution. For comparison and validation of the rapid method, plasmid DNA was also isolated by the large-scale preparation method described by Maniatis et al.32)
Curing Test of Plasmids To determine whether butachlor degradation depended on the presence of the plasmids, a curing test was performed as described by Rheinwald et al.33) Approximately 500 cells were
inoculated into 5 ml of LB medium including Mitomycin C (0-20 μg/mL), and the inoculums were cultured at 30°C for 48 hours. A second generation was cultured as above and then inoculated to LB medium including butachlor, the plasmids were isolated from cured cells, and resolved by agarose gel electrophoresis.
Agarose Gel Electrophoresis Electrophoresis was carried out on 0.8% agarose gels at 100 V for 2.5 hours using TEA buffer.32) Hind III DNA fragments were used as molecular size markers. After electrophoresis, the agarose gels were stained with Ethidium Bromide (1 mg/ mL) for 40 min, washed with distilled water, and photographed with Polaroid film Type 667.
Analysis of Results Each experiment was performed in triplicate and repeated two times. The standard deviation was less than 10 % of the mean. All comparisons were statistically compared using a t-test with P < 0.05.
RESULTS Effects of Butachlor on Bacterial Growth We first identified the effective concentration of butachlor required to build a proper experimental design. Protein concentration (mg/mL) at stationary phase was used as a representation of Rs. rubrum KS-301 growth in basal medium containing pyruvate, malate or ribose as a carbon source, supplemented with concentrations of butachlor ranging from 10-1 to 10-6 M (Fig. 1). Our results revealed that the bacterial growth decreased with increasing concentrations of butachlor up to 10-3 M, and almost no growth was seen at butachlor concentrations of 10 -2 M or higher. Interestingly, cultures grown in the presence of 10 -3 M butachlor using ribose as the carbon source showed poor growth. We then studied the effects of (NH4)2SO4, dinitrogen gas, organic carbon (pyruvate and malate),
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Figure 1. The effect of butachlor concentration versus substrate on growth of Rs. rubrum KS-301.
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while Rhodopseudomonas (Rp.) blastica showed the lowest growth rate among the seven tested species. The growth rates of Rb. capsulatus were about 2 times higher than those of Rp. blastica in the absence of butachlor and about 3 times higher in the presence of butachlor, regardless of whether the carbon source was pyruvate or malate. The growth rates of Rs. rubrum were second in both cases, regardless of butachlor treatment. The growth rate of Rp. viridis was slightly (within the error range) higher than that of Rb. sphaeroides in the presence of butachlor, while the opposite was true in the absence of butachlor. Butachlor treatment decreased the growth rates of Rb. sphaeroides, Rp. acidophila and Rm. vannielii by around 50%, regardless of the carbon source (Fig. 2).
Effects of Butachlor on Nitrogen-Fixing Ability
Figure 2. The effect of butachlor (10 -3 M) on the growth rate of phototrophic nonsulfur bacteria using (NH 4)2SO 4 as nitrogen source. (a), pyruvate as the carbon source; (b), malate as the carbon source. 1, Rb. Capsulatus; 2, Rs. Rubrum; 3, Rb. Sphaeroides; 4, Rp. Viridis; 5, Rp. Acidophila; 6, Rm. Vannielii; 7, Rp. Blastica.
and the pH value on the influence of butachlor on seven species of phototrophic nonsulfur bacteria, as measured in terms of the specific growth rate (μ). In medium containing (NH4)2SO4 as the nitrogen source, untreated cells grew 1.2-2.1 times faster than those treated with butachlor (P < 0.05) (Fig. 2). Rb. capsulatus showed the highest growth rate regardless of butachlor treatment,
The cell growth rates were generally lower when using N 2 gas as a nitrogen source versus (NH 4)2SO 4 (Fig. 3), but these rates were not significantly different in the presence or absence of butachlor, especially for Rb. capsulatus and Rs. rubrum (P > 0.05). Rb. capsulatus showed a 4-fold higher growth rate than Rp. blastica in the presence of butachlor, regardless of the carbon source (pyruvate or malate). Rs. rubrum showed relatively higher growth rates as Rb. capsulatus, regardless of butachlor treatment. Rp. viridis showed higher growth rates than Rb. sphaeroides in the presence of butachlor, but the opposite was true in the absence of butachlor. To determine the ability of nitrogen fixation, we cultured Rs. rubrum cells for seven days with pyruvate, malate or ribose as the carbon source, and measured ammonium production (Fig. 4). Among the three carbon sources, ammonium production was the highest (87 μg/mL) in pyruvate-containing cultures treated with 10-5 M butachlor for 5 days, with levels declining by day 7. Malate-containing cultures showed a similar pattern, but yielded lower levels of ammonium production, while ribose-containing cultures showed the lowest levels of ammonium production. In
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Figure 3. The effect of butachlor (10 -3 M) on the growth rate of phototrophic nonsulfur bacteria using N 2 gas as the nitrogen source. (a), pyruvate as the carbon source; (b), malate as the carbon source. 1, Rb. Capsulatus; 2, Rs. Rubrum; 3, Rb. Sphaeroides; 4, Rp. Viridis; 5, Rp. Acidophila; 6, Rm. Vannielii; 7, Rp. Blastica.
general, ammonium formation decreased with increasing concentrations of butachlor ranging from 10 -5 to 10-2 M. As shown in Figure 5(a), butachlor-treated Rb.
Figure 5. Comparison of nitrogenase activity in nonsulfur photosynthetic bacteria. (a), pyruvate as the carbon source; (b), malate as the carbon source. 1, Rb. Capsulatus; 2, Rs. Rubrum; 3, Rb. Sphaeroides; 4, Rp. Viridis; 5, Rp. Acidophila; 6, Rm. Vannielii; 7, Rp. Blastica.
capsulatus and Rs. rubrum showed higher levels of nitrogenase activity than untreated cells although statistically not different (P > 0.05), while the other five strains showed 1.2~6 times higher nitrogenase activity in the absence of butachlor (P < 0.05). Cells cultured in malate showed a
Figure 4. The effect of various concentration of butachlor on changes in NH +4 production by Rs. rubrum KS-301 using pyruvate, malate and ribose as the carbon sources under nitrogen fixing conditions. (a), pyruvate; (b), malate; (c), ribose. ENVIRONMENTAL ENGINEERING RESEARCH / VOL. 12, NO. 4, 2007
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similar pattern as pyruvate but 1~1.3 times lower nitrogenase activity than those cultured in pyruvate in all seven strains, regardless of butachlor treatment. Of the untreated cultures, Rb. capsulatus cultured in pyruvate showed the highest nitrogenase activity (798 nM/mg protein), with Rs. rubrum showing the second highest activity (693 nM/mg protein). Rp. acidophila and Rm. vannielii, which grew well in acidic media, had comparatively low nitrogenase activities (about 38-60% that of Rb. capsulatus). Rp. blastica showed the lowest nitrogenase activity at 246 nM/mg protein, which was 31-38% that of Rb. capsulatus. Of the butachlor-treated cultures, Rb. capsulatus grown in pyruvate-containing cultures showed the highest nitrogenase activity of 842.7 nM/mg protein, with Rs. rubrum showing the next highest nitrogenase activity of 766.8 nM/mg protein. The activities of these two species were little higher than those of their untreated counterparts, and 15~16 times higher than the lowest activity observed (Rp. Blastica). The nitrogenase activities of Rb. sphaeroides were lower than those of Rs. rubrum, regardless of carbon source or butachlor treatment. Rb. sphaeroides cultured in pyruvate without butachlor showed 1.5~1.9 fold higher activity than Rm. vannielii and Rp. blastica. In Rp. acidophila and Rp. blastica, butachlor treatment decreased the nitrogenase activities to 16~24% of control levels, with a larger decrease seen in cultures using malate as the carbon source versus those using pyruvate. To test whether butachlor affected nitrogen metabolism, we examined glutamine synthetase activity in treated and untreated bacteria. In order to maintain the activity of glutamine synthetase, bacteria were pretreated with cethyltrimethylammonium bromide (0.1 mg/mL) in 0.8 M Tris- HCl buffer (pH 7.0) at 37°C and then the glutamine synthetase activity was determined as the amount of γ-glutamylhydroxamate (Fig. 6). The results of the glutamine synthease analysis were comparable to those of the nitrogenase activity assays (Fig. 5). Glutamine synthetase activity showed 1~1.2 times higher activity in cultures using pyruvate as a carbon source versus those using
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Figure 6. A, pyruvate as carbon source; B, malate as carbon source. and r-glutamylhydroxamate as the glutamine synthetase in N 2grown phototrophic nonsulfur bacteria. (a), pyruvate as the carbon source; (b), malate as the carbon source. 1, Rb. Capsulatus; 2, Rs. Rubrum; 3, Rb. Sphaeroides; 4, Rp. Viridis; 5, Rp. Acidophila; 6, Rm. Vannielii; 7, Rp. Blastica.
malate. In butachlor-treated cultures, Rb. capsulatus and Rs. rubrum showed 1.1~1.2 times higher glutamine synthetase activity, while the other 5 strains showed lower activities. In the butachlortreated cultures, the presence of pyruvate was associated with 1.1~1.4 times higher glutamine synthetase activities than those seen in the presence of malate. The glutamine synthetase activities in Rp. acidophila cultures treated with butachlor were only 21~24% of the untreated control values.
Use of Butachlor as a Carbon Source To determine whether the seven species of phototrophic nonsulfur bacteria could utilize butachlor as a sole carbon sourse, the strains were cultured for 7 days in media containing 10-5 to 10-2 M butachlor. When the growth rates were compared on day 7, all strains showed their highest growth rates at the concentration of 10 -3
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Figure 7. Utilization of butachlor as a sole carbon source in nonsulfur photosynthetic bacteria (unit of growth rate: h -1).
following in descending order. The growth rate of Rm. vannielii was the lowest. To determine whether butachlor could be utilized as a carbon source by plasmid genes, we performed a curing test using Mitomycin C (0.5-20 μg/mL) according to Rheinwald et al.33) Then, cured cells, which lost the ability to utilize butachlor, were treated for the plasmid isolation. Cured plasmids did not show bands following agarose gel electrophoresis, while uncured plasmids could be visualized as EtBr-stained bands (Fig. 8). The bands were not visible in Rm. vannielii cured with 0.5 to 20 μg/mL Mitomycin C, Rp. blastica cured with 5-20 μg/mL Mitomycin C, or Rs. rubrum cured with 20 μg/mL Mitomycin C (Fig. 8).
DISCUSSION
Figure 8. Agarose gel electrophoresis of But+ and But plasmids purified from 3 species of Rhodospirillaceae. Lane 1, Rm. vannielii, wild type (But+); lane 2, Rm. vannielii, cured cell (But ) with 0.5 μg/mL Mitomycin C; lane 3, Rm. vannielii, cured cell (But-) with 5 μg/mL Mitomycin C; lane 4, Rm. vannielii, cured cell (But ) with 10 μg/mL Mitomycin C; lane 5, Rm. vannielii, cured cell (But-) with 20 μg/mL Mitomycin C; lane 6, Rp. blastica, wild type (But+); lane 7, Rp. blastica, cured cell (But-) with 5 μg/mL Mitomycin C; lane 8, Rp. blastica, cured cell (But-) with 10 μg/mL Mitomycin C; lane 9, Rp. blastica, cured cell (But-) with 20 μg/mL Mitomycin C; lane 10, Rs. ruburum, wild type (But+); lane 11, Rs. ruburum, cured cell (But-) with 20 μ g/mL Mitomycin C; lane 12, Hind III digested λ DNA.
M butachlor (Fig. 7). Rp. viridis showed the highest growth rate among the seven, with Rs. rubrum and Rb. capsulatus and Rp. blastica
The toxicity of butachlor to microbes differs among phototrophic nonsulfur bacteria, cyanobacteria and Rhizobium. Previous studies revealed that the growth of nitrogen fixing cyanobacteria was inhibited by 2-10 μg/mL butachlor and that Nostoc muscorum was mutated by concentrations of 10 μg/mL,34) while Anabaena,35) Rhizobium and Gloeocapsa 12,36) could grow in the presence of 100 μg/mL butachlor. The rice fields in Korea are generally treated with 100-200 μg/mL of butachlor annually. Here, we show that 10-3 M (156 μg/mL) butachlor decreased the growth rates of seven species of phototrophic nonsulfur bacteria to 47-83% of control values (Figs. 2 and 3), and 10-2 M (1560 μg/ml) butachlor completely inhibited the growth of these organisms (Fig. 1). Our results indicate that these seven species of phototrophic nonsulfur bacteria grew relatively well in the presence of butachlor, and might survive better than other nitrogen-fixing organisms in highly contaminated sites. Singh et al.36) reported that resistance to butachlor appeared to be correlated with evolution, as resistance decreases in the order of Rhizobium species > unicellular cyanobacteria > filamentous cyanobacteria > higher plants and monocotyledons. This suggests that more primitive organisms have
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more resistance to butachlor and that the higher and monocotyledons are more sensitive. Rhizobium leguminosarum showed 50 times more resistance than cyanobacteria, but we herein show that purple nonsulfur bacteria are more resistant than Rhizobium. Thus, purple nonsulfur bacteria may be more primitive organisms than those originally reported by Singh et al.36) + Cells cultured on NH 4 as a nitrogen source showed 1.3-1.6 times higher growth rates than those grown in nitrogen gas using either pyruvate and malate as carbon sources (Figs. 2 and 3), and butachlor-treated cells also showed 1-1.4 times higher growth rates cultured on NH4, as mentioned by Yoch 37) who mentioned about the higher growth rates on NH 4+ than N 2 gas. In terms of growth rates and nitrogen fixation, the seven tested species performed best when using the three-carbon (pyruvate) as a carbon source, followed by the four-carbon (malate) and then the five-carbon (ribose), regardless of butachlor treatment (Fig. 4). This may be due to easier utilization of the smaller molecule, and is consistent with the findings of Schick38) and Hillmer and Gest,23) who reported that pyruvate was a more relevant carbon source than malate and ribose because it quickly proceeds to the ammonium metabolism that inhibits nitrogenase activity in vivo. When the bacteria were cultivated with (NH 4)2SO 4 as a nitrogen source, the initial pH declined to 6.2-6.8 regardless of the absence or presence of butachlor, but under nitrogen fixing conditions, the pH increased to 7.8-8.4 (data not shown), suggesting that NH 4+ is more readily used for metabolism than nitrogen fixation.39) Previous studies showed the nitrogen-fixing ability was highest in Rb. capsulatus, followed by Rb. sphaeroides and then Rs. rubrum.18,19) However, our results revealed that Rb. capsulatus had the highest nitrogen-fixing ability, followed by Rs. rubrum Ks-301 and then Rb. sphaeroides (Fig. 5). Madigan et al.18) reported that Rp. acidophila, Rp. viridis and Rm. vannielii had very similar nitrogenase activities, whereas we found that Rp. blastica had the lowest nitrogenase activity, i.e. only 31-38% that of Rb. capsulatus.
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Such differences might be due to strain-specific nitrogenase activity or other characteristics.18,19) For example, Rs. rubrum Ks-301 was previously reported to have higher nitrogenase activity, hydrogen gas production and better immobilization of microorganism beads.40,41) We found that the nitrogenase activity and growth rates of 5 species (excluding Rb. capsulatus and Rs. rubrum Ks-301) decreased to 17-83% (Fig. 5) and 53-83%, respectively, of the untreated control values following butachlor treatment (Fig. 3) . It appears that butachlor inhibits nitrogenase activity more effectively than growth rate in some species, especially Rp. acidophila. In contrast, butachlor treatment increased nitrogenase activity by 2-10% and growth rates by 1-4% in Rb. capsulatus and Rs. rubrum grown in the presence of pyruvate. As these slight increases are within the error ranges, future work will be required to determine whether butachlor plays an effective role as an energy source in these organisms. Rb. sphaeroides showed 1-1.6 times more nitrogenase activity than Rp. viridis, Rp. acidophila, Rm. vannielii and Rp. blastica. The species in genera Rhodobacter and Rhodospirillium had more nitrogenase activity than those in genera Rhodopseudomonas and Rhodomicrobium, while the latter were more greatly inhibited by butachlor. So the species in the two genera could be used as the possible bioremediation agents in butachlorcontaminated sites. Consistent with the report of Pandey et al.9) that the herbicide, propanil, was more inhibitory against cyanobacteria grown in acidic medium than in alkaline medium, Rp. acidophila and Rm. vannielii grown in acidic medium were significantly influenced by butachlor treatment. Nitrogenase activity and growth rates were parallel regardless of butachlor treatment except in the case of Rp. acidophila, which grew well in association with lower nitrogenase activity. This seems to indicate that nitrogen is a critical factor for the growth of most species of microbes, even under harsh environmental conditions. Glutamine synthetase behaved in a manner similar to nitrogenase activity (Fig. 6), and was always
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proportional to nitrogenase activity in control and butachlor-treated cultures. These findings seem to indicate that nitrogen fixation and nitrogen metabolism take place consecutively in phototrophic nonsulfur bacteria, regardless of butachlor treatment. Our analysis of butachlor as a sole carbon source seemed to suggest that some phototropic nonsulfur bacteria can utilize 10-3 M butachlor to maximize their growth rates (Fig. 7). We further noted a decrease in pH under these conditions, likely indicating that butachlor may be degraded/ utilized. However, in the presence of primary substrates (pyruvate, malate and ribose), cell growth was inhibited by 10-3 M of butachlor (Fig. 1), implying that the herbicide may act as a competitive inhibitor. Previously, Lee and Lee42,43) determined the biodegradabilities of butachlor during anaerobic culture of phototropic nonsulfur bacteria (Rb. capsulatus, Rs. rubrum, Rp. acidophila and Rp. viridis), as assessed by decreased butachlor absorbance measured with a UV-scanning spectrometer. The authors reported that Rb. capsulatus and Rs. rubrum showed higher removal rates than Rp. acidophila and Rp. viridis. These findings are consistent with our observation that Rb. capsulatus and Rs. rubrum showed higher growth rates than Rp. acidophila and Rp. viridis. Thus, the breakdown and up-take of butachlor under anaerobic conditions are of interest since herbicides are generally degraded under aerobic conditions. Nitrogen fixation and growth in butachlortreated cells of genus Gloeocapsa has been associated with plasmid-borne genes,12) as has degradation of herbicides such as 2,4-D and MCPA, as well as toluene, xylene, naphthalene and 2,4,5-trichlorophenoxy acetic acid.44,45) In this study, we were able to isolate appropriatelysized plasmids from all 7 tested species (data not shown), and we always observed 9.7-23.5 kb plasmid in rapid isolation or ccc-plasmid DNA under all conditions. But it is already known that plasmids do not play any roll about nitrogen fixation and butachlor degradation as cyanobacteria. Klipp et al.21) noticed that nitrogen fixation
in phototrophic bacteria depends on chromosomal DNA not on plasmid. We used a curing test to show that butachlor could be degraded by plasmids in Rp. blastica, Rm. vannielii and Rs. rubrum (Fig. 8). But a further research is needed to prove whether or not the results are true. For industrial or bioremedial applications, nonsulfur photosynthetic bacteria have several benefits over other nitrogen-fixing bacteria, such as ubiquitousness, high resistance, degrading ability on various compounds and high productivity. Historically, nonsulfur photosynthetic bacteria have been utilized for bioremediation of water pollution,46,47) production of industrial hydrogen gas,48) feeding of livestock, degradation of organic compounds46) and fertilizing of crops. In addition, phototrophic nonsulfur bacteria have a larger distribution range than cyanobacteria,14) making them potentially useful candidates for a variety of research areas. As our results indicate that phototrophic nonsulfur bacteria had more resistance to butachlor than other nitrogen-fixing bacteria, we propose that they can be used for bioremediation. In sum, we herein show for the first time that butachlor treatment of Rb. capsulatus and Rs. rubrum does not inhibit growth or nitrogen fixation of these organisms, indicating that these two species may be useful candidates for developing nitrogen-fixing strains or effective vectors for use in degrading a variety of persistent contaminants. We recognized a diversity of microorganisms. Each species acts so differently.
REFERENCES 1. Kamen, M. D., and Gest, H., Evidence for a nitrogenase system in the photosynthetic bacteria Rhodospirillum rubrum, Science, 109, 560-562 (1949). 2. Madigan, M. T., Microbiology of nitrogen fixation by anoxygenic photosynthetic bacteria, In Blankenship, R. E., Madigan, M. T., and Bauer C. E., (eds.), Anoxygenic photosynthetic bacteria. Kluwer, Boston, MA., pp. 915-928 (1995). 3. Oelze, J., and Kein, G., Control of nitrogen
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4.
5.
6.
7.
8.
9.
10.
11.
12.
13.
fixation by oxygen in purple nonsulfur bacteria, Arch. Microbiol., 165, 219-225 (1996). Ormerod, J. G., Ormerod, K. S., and Gest, H., Light-dependent utilization of organic compounds and photoproduction of molecular hydrogen by photosynthetic bacteria: relationship with nitrogen metabolism, Arch. Biochem. Biophys., 94, 449-463 (1961). Siefert, E., Irgens, R. L., and Pfennig, N., Phototrophic purple and green bacteria in sewage treatment plant, Appl. Environ. Microbiol., 35, 38-44 (1978). Sylvie, E., Dischert, W., Colbeau, A., and Bauer, C. E., Expression of uptake hydrogenase and molybdenum nitrogenase in Rhodobacter capsulatus is coregulated by the RegB- RegA two-component regulatory system, J. Bacteriol., 182, 2831-2837 (2000). Min, H., Ye, Y. F., Chen, Z. Y., Wu, W. X., and Yufeng, D., Effects of butachlor on microbial populations and enzyme activities in paddy soil, J. Environ. Sci. Health A, 36, 581-595 (2001). Min, H., Ye, Y. F., Chen, Z. Y., Wu, W. X., and Du, Y. F., Effects of butachlor on microbial enzyme activities in soil, J. Eviron. Sci., 14, 413-417, China (2002). Pandey, A. K., Srivastava, V., and Tiwari, D. N., Toxicity of the herbicide stamf-34 (propanil) on Nostoc calcicola, Zeit Allg. Microbiol., 24, 369-376, Germany (1984). Suseela, M. R., Effect of butachlor on growth and nitrogen Anabaena sphaerica, J. Environ. Biol., 22, 201-203 (2001). Lee, H. S., Herbicide effects on the growth of Rhodopseudomonas palustris, In Kitamura, H., Morida, S. H., and Yamashita J. P. (eds.), The Photosynthetic Bacteria, Gakukai Publishing Center, pp. 130-132, Japan (1984). Singh, R. P., Singh, R. K., and Tiwari, D. N., Effect of herbicide on the composition of cyanobacteria in transplanted rice, Plant Prot. Q, 1, 101-102 (1986). Beeson, K. E., Erdner, D. L., Bagwell, C. E., Lovell, C. R., and Sobecky, P. A., Differentiation of plasmids in marine diazotroph
14.
15.
16. 17.
18.
19.
20.
21.
22.
23.
145
assemblages determined by randomly amplified polymorphic DNA analysis, Microbiol., 148, 179-189 (2002). Habte, M., and Alexander, M., Nitrogen fixation by photosynthetic bacteria in lowland rice culture, Appl. Environ. Microbiol., 39, 331-338 (1980). Chen, Y. L., Lo, C. C., and Wang, Y. S., Photodecomposition of the herbicide butachlor in aqueous solution, J. Pestic. Sci., 7, 41-45 (1982). Chung, K. Y., Enhanced degradation of pesticides, Environ. Eng. Res., 5, 47-61 (2000). Ye, C. M., Wang, X. J., and Zheng, H. H., Biodegradation of acetanilide herbicides acetochlor and butachlor in soil, J. Environ. Sci., 14, 524-529, China (2002). Madigan, M. T., Cox, S. S., and Stegman, R. A., Nitrogen fixation and nitrogenase activities in members of the family Rhodospirillaceae, J. Bacteriol., 157, 73-78 (1984). Serebrayakova, L., Teslya, T. E. A., Gogotov, I. N., and Kontrateva, E. N., Nitrogenase and hydrogenase activity of the members of the nonsulfur purple bacteria Rhodopseudomonas sphaeroides and Rhodopseudomnas capsulata, Microbiologia, 49, 401-407 (1980). Drepper, T., Raabe, K., Giaourakis, D., Gendrullis, M., Masepohl, B., and Klipp, W., The Hfq-like protein NrfA of the phototrophic purple bacterium Rhodobacter capsulatus controls nitrogen fixation via regulation of nifA and anfA expression, FEMS Microbiol. Lett., 215, 221-227 (2002). Klipp, W., Masepohl, B., and Puhler, A., Identification and mapping of nitrogen fixation genes of Rhodobacter capsulatus: Duplication of nifA-nifB region, J. Bacteriol., 170, 693-699 (1988). Willison, J. C., Ahombo, J., Chabert, J., Magnin, J., and Vignais, P. M., Genetic mapping of the Rhodosudomonas capsulata chromosome shows non-clustering of genes involved in nitrogen fixation, J. Gen. Microbiol., 131, 3002-3025 (1985). Hillmer, P., and Gest, H., H 2 metabolism in
VOL. 12, NO. 4, 2007 / ENVIRONMENTAL ENGINEERING RESEARCH
146
24.
25.
26.
27.
28.
29.
30.
31.
32.
33.
34.
Lee, Kyung Mi, Jaisoo Kim, and Hyun Soon Lee
the photosynthetic bacterium Rhodopeudomonas capsulata: H 2 production by growing cultures, J. Bacteriol., 129, 724-731 (1977). Schlegel, H. G., The physiology of hydrogen bacteria, Antonie van Leeuwenhoek J. Microbiol. Serol., 42, 181-201, Netherlands (1976). Lowry, O. H., Rosenbrough, N. J., Farr, A. L., and Randall, R. J., Protein measurement with the folin phenol reagent, J. Biol. Chem., 193, 265-275 (1951). Chaney, A. L., and March, E. P., Modified reagents for determination of urea and ammonia, Clin. Chem., 8, 130-132 (1962). Colbeau, A., Kelley, B. C., and Vignais, P. M., Hydrogenase activity in Rhodopseudomonas capsulatus relationship with nitrogenase activity, J. Bacteriol., 144, 141-148 (1980). Shapiro, B. M., and Stadtman, E. R., Glutamine synthetase (Escherichia coli), In Colowick, S. P., and Kaplan N. O., (eds.), Methods in Enzymology, 17A, 8th ed. Academic press, New York, pp. 901-992 (1970). Bender, R. A., Janssen, K. A., Resinck, A. D., Blumenberg, M., Foor, F., and Magasanik, B., Biochemical parameters of glutamine synthetase from Klebsiella aerogenes, J. Bacteriol., 129, 1001-1009 (1977). Birnboim, H. C., and Doly, J., A rapid alkaline extraction procedure for screening recombinant plasmid DNA, Nucleic Acid Res., 7, 1513-1523 (1979). Ish-Horowitz, D., and Burke, F. J., Rapid and efficient cosmid vector cloning, Nucleic Acid Res., 9, 2989-2998 (1981). Maniatis, T., Fritsch, E. E., and Sambrook, J., Molecular cloning, a laboratory manual, Cold Spring Harbor Laboratory, Cold Spring Harbor, NY (1982). Rheinwald, J. G., Chakarbrty, A. M., and Gunsalus, I. C., A transmissible plasmid controlling camphor oxidation in Pseudomonas putida, Proc. Natl. Acad. Sci., 75, 885-889 (1973). Singh, H. N., Singh, H. R., and Vaishampayan, A., Toxic and mutagenic action of the herbicide alachlor (Lasso) on various strains of
35.
36.
37.
38.
39.
40.
41.
42.
43.
44.
the nitrogen fixing blue green algae Nostoc muscorum and characterization of herbicideinduced mutants resistant to methylamine and L-methionin-DL-sulfoximine, Environ. Exp. Bot., 19, 5-12 (1979). Chen, P. C., Effect of herbicides on growth and photosynthesis of Anabaena CH 2 and CH 3, Proc. Natl. Sci. Coun. Repub. China, part B Life Sci., 10(3), 151-156 (1986). Singh, H. N., and Vaishampayan, A., Biological effects of rice-field herbicide Machete on various strains of the nitrogen-fixing blue green algae Nostoc muscorum, Environ. Exp. Bot., 18, 87-94 (1978). Yoch, D. C., Nitrogen fixation by photosynthetic bacteria, In Clayton, R. K., and Sistrom, W. R., (eds.), The Photosynthetic Bacteria, Plenum Publishing Co, New York, pp. 657-676 (1978). Schick, H. J., Substrate and light dependent fixation of molecular nitrogen in Rhodospirillum rubrum, Arch. Microbiol., 75, 89-101 (1971). Kim, J. K., Park, K. J., Cho, K. S., Nam, S. W., and Kim, Y. H., Characteristics of a water-purification system using immobilized photosynthetic bacteria beads, Environ. Eng. Res, 5, 227-238 (2005). Baek, N., The study of transfer resistance of the inner material of microorganism immobilized beads, MS Thesis, Yonsei University, Seoul, Korea (1987). Seon, Y. H., Hydrogen production by phototrophic bacteria, MS thesis, Yonsei University, Seoul, Korea (1985). Lee, K. M., and Lee, H. S., Degradation of herbicide butachlor by purple nonsulfur photosynthetic bacteria, J. SKKU 40, 119-129, Korea (1989). Lee, K. M., and Lee, H. S., Effects of butachlor on the growth of purple non-sulfur bacteria, Kor. J. Microbiol., 29, 130-135 (1991). Top, E. M., Van Daele, P., De Saeyer, N., and Forney, L. J., Enhancement of 2,4-dichlorophenoxyacetic acid (2,4-D degradation in soil by dissemination of catabolic plasmids,
ENVIRONMENTAL ENGINEERING RESEARCH / VOL. 12, NO. 4, 2007
Effects of the Herbicide, Butachlor, on Nitrogen Fixation in Phototrophic Nonsulfur Bacteria
Antonie van Leeuwenhoek, 73, 87-94 (1998). 45. Turnbull, G. A., Ousley, M., Walker, A., Shaw, E., and Morgan, J. A., Degradation of substituted phenylurea herbicides by Arthrobacter globiforms strain D47 and characterization of a plasmid-associated hydrolase gene, puhA, Appl. Environ. Microbiol., 67, 2270-2275 (2001). 46. Kobayashi, M., Fujii, K., Shimamoto, I., and Maki, T., Treatment and reuse of industrial
147
wastewater by phototrophic bacteria, Prog. Water Tech., 11, 279-284 (1978). 47. Lee, S S., Ju, H. J., Lee, S. C., Chang, M., Lee, T. K., Shim, H. J., and Shin, E. B., The high treatment system development of waste water by photosynthetic bacteria, Korean J. Microbiol. Biotechnol., 30, 189-197 (2002). 48. Weaver, P. F., Lien, S., and Seibert, M., Photobiological production of hydrogen, Solar Energy, 24, 3-45 (1980).
VOL. 12, NO. 4, 2007 / ENVIRONMENTAL ENGINEERING RESEARCH