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A
Salmo
saler DNA pol gb|AGKD04000303.1 398 11-44333. 99
Salmo
saler ref ....
66 Salmo
sa lar DNApol gb|AGKD4000035,1| 8910391247. 85
Salmo
salar ...
DNA polymerase
Full (181-4278)
First half (181-2081)
Second half (2082-4278)
Boleophthalmus pectinirostris DNApol KN522026.1
Boleophthalmus pectinirostris DNApol KN522026.1
Larimichthys croceaDNApol gi|808859982|gb|KQ042671.1| 159082-164132
100
38
100
98
Monopterus albus DNApol NW 018128515.1
58
Esox lucius DNApol AZJR02001005.1
Oncorhynchus mykiss DNApol CM007935.1
86
63
76
100
46
100
Oryzias latipes DNApol ctg7180000006021 36765-41661 Oryzias latipes DNApol ctg7180000005881 2858-7755
51
24Oryzias latipes DNApol ctg7180000006866 9979-14877
Oryzias latipes DNApol ctg7180000005961 2264-7162 100 39
65 6
27 Oryzias latipes DNApol ctg7180000005961 2264-7162 54
82 Oryzias latipes DNApol ctg7180000006510 31099-33828 57 Oryzias latipes DNApol ctg7180000006459 9392-13845 61
Oryzias latipes DNApol ctg7180000006921 17681-22582 Oryzias latipes DNApol ctg7180000006450 15026-19930 Oryzias latipes DNApol ctg7180000006001 17356-22264
Oryzias latipes DNApol ctg7180000006370 32275-37173
Oryzias latipes DNApol ctg7180000005224 1381-6281
Oryzias latipes DNApol ctg7180000006386 11127-16027
Oryzias latipes DNApol ctg7180000004823 1857091-1861994
Oryzias latipes subtype1 ref
31Oryzias latipes DNApol ctg7180000006163 74893-79797
Oryzias latipes DNApol ctg7180000006103 14066-18964
Oryzias latipes DNApol ctg7180000005567 22244-27145
Oryzias latipes DNApol ctg7180000008510 8539-13376
23
Oryzias latipes DNApol ctg7180000006455 10222-15125
Oryzias latipes DNApol ctg7180000008353 15651-20483
Oryzias latipes DNApol ctg7180000006184 53918-58822
Oryzias latipes DNApol ctg7180000006021 36765-41661
Oryzias latipes DNApol ctg7180000005567 22244-27145
Oryzias latipes DNApol ctg7180000005881 2858-7755
Oryzias latipes DNApol ctg7180000008353 15651-20483
Oryzias latipes DNApol ctg7180000005874 29801-34701
Oryzias latipes DNApol ctg7180000006978 2852-5579
Oryzias latipes DNApol ctg7180000005466 15645-20545
Oryzias latipes DNApol ctg7180000005466 15645-20545
3 Oryzias latipes DNApol ctg7180000004770 14972-17695 Oryzias latipes DNApol ctg7180000007638 1-2939 39
43
Oryzias latipes DNApol ctg7180000006921 17681-22582
Oryzias latipes DNApol ctg7180000006531 37884-40428 Oryzias latipes DNApol ctg7180000005937 25028-27572
7
Oryzias latipes DNApol ctg7180000008405 2908464-2913295
2 58 Oryzias latipes DNApol ctg7180000005229 5486-10386
Oryzias latipes DNApol ctg7180000006602 44238-49126
Oryzias latipes DNApol ctg7180000007638 1-2939
28
Oryzias latipes DNApol ctg7180000006531 37884-40428
8 Oryzias latipes DNApol ctg7180000006386 11127-16027 60
Oryzias latipes DNApol ctg7180000006441 4038-8928
21Oryzias latipes DNApol ctg7180000006441 4038-8928
Oryzias latipes DNApol ctg7180000006163 74893-79797
21 82 Oryzias latipes DNApol ctg7180000007379 18498-23398
Oryzias latipes DNApol ctg7180000004823 1857091-1861994
Oryzias latipes DNApol ctg7180000008620 31245-36145
11
Oryzias latipes DNApol ctg7180000008360 32080-36976 Oryzias latipes DNApol ctg7180000007973 8-3403
Oryzias latipes DNApol ctg7180000007973 8-3403
Oryzias latipes DNApol ctg7180000006459 9392-13845
Oryzias latipes DNApol ctg7180000006163 74893-79797
Oryzias latipes DNApol ctg7180000006392 1048-5949
4 46 Oryzias latipes DNApol ctg7180000006456 10389-15270
6
6 Oryzias latipes DNApol ctg7180000006103 14066-18964
Oryzias latipes subtype1 ref
Oryzias latipes DNApol ctg7180000006001 17356-22264
21
Oryzias latipes DNApol ctg7180000005633 20546-25351
Oryzias latipes DNApol ctg7180000005625 9856-14757
Oryzias latipes DNApol ctg7180000005224 1381-6281
Oryzias latipes DNApol ctg7180000008360 32080-36976
Oryzias latipes DNApol ctg7180000005229 5486-10386
Oryzias latipes DNApol ctg7180000006184 53918-58822
Oryzias latipes DNApol ctg7180000008439 29475-34351
Oryzias latipes DNApol ctg7180000005937 25028-27572
Oryzias latipes DNApol ctg7180000006001 17356-22264
100
Oryzias latipes DNApol ctg7180000006184 53918-58822
Oryzias latipes DNApol ctg7180000004823 1857091-1861994
96
Oryzias latipes DNApol ctg7180000006450 15026-19930
Oryzias latipes DNApol ctg7180000006921 17681-22582
Oryzias latipes DNApol ctg7180000008405 2908464-2913295
Oryzias latipes DNApol ctg7180000006263 7671-12570
Austrofundulus limnaeus DNApol LDAR01S000580.1
47
Oryzias latipes DNApol ctg7180000006455 10222-15125
43
Oryzias latipes DNApol ctg7180000005874 29801-34701
Oryzias latipes DNApol ctg7180000005633 20546-25351
Nothobranchius furzeri DNApol LN600700.1c 100Oreochromis niloticus DNApol gi|1095461974|gb|MKQE01000452.1| 8517-13162
Oreochromis niloticus subtype2 ref
53
Nothobranchius furzeri DNApol LN600656.1f 99
Austrofundulus limnaeus DNApol LDAR01S000114.1
100
56
Kryptolebias marmoratus DNApol LHSH01021468-25413-conju
Pundamilia nyererei DNApol JH421239.1 91 100
Nothobranchius furzeri DNApol LN600656.1f Nothobranchius furzeri DNApol LN600700.1c 100 Oreochromis niloticus DNApol gi|1095461974|gb|MKQE01000452.1| 8517-13162
Oreochromis niloticus subtype2 ref
99
67
94
29 69
Neolamprologus brichardi DNApol JH422345.1
46
Oreochromis niloticus DNApol gi|1095462344|gb|MKQE01000082.1| 310323-314131
58
Oreochromis niloticus DNApol gi|1095462345|gb|MKQE01000081.1| 352042-356930 Oreochromis niloticus DNApol gi|1095461916|gb|MKQE01000510.1| 34-4219
100 Oreochromis niloticus DNApol gi|1095462409|gb|MKQE01000017.1| 43782228-43787141 78 Oreochromis niloticus subtype1 ref 98
Oreochromis niloticus DNApol gi|1095462344|gb|MKQE01000082.1| 310323-314131 99 Oreochromis niloticus DNApol gi|1095462409|gb|MKQE01000017.1| 43782228-43787141
82
Oreochromis niloticus subtype1 ref
29 Oreochromis niloticus DNApol gi|1095461355|gb|MKQE01001071.1| 15087-19987 22 Oreochromis niloticus DNApol gi|1095462236|gb|MKQE01000190.1| 161064-165900 93
Oreochromis niloticus DNApol gi|1095462409|gb|MKQE01000017.1| 43782228-43787141 Oreochromis niloticus subtype1 ref
Oreochromis niloticus DNApol gi|1095461865|gb|MKQE01000561.1| 12576-17438
Oreochromis niloticus DNApol gi|1095462236|gb|MKQE01000190.1| 161064-165900
Oreochromis niloticus DNApol gi|1095461903|gb|MKQE01000523.1| 3-3532 Melanochromis auratus DNApol ABPL01012872-1012874-1007469
54
Oreochromis niloticus DNApol gi|1095462344|gb|MKQE01000082.1| 310323-314131 Oreochromis niloticus DNApol gi|1095462345|gb|MKQE01000081.1| 352042-356930
Oreochromis niloticus DNApol gi|1095461916|gb|MKQE01000510.1| 34-4219
26
Neolamprologus brichardi DNApol JH422345.1 100 57 Oreochromis niloticus DNApol gi|1095461903|gb|MKQE01000523.1| 3-3532 43 Oreochromis niloticus DNApol gi|1095462345|gb|MKQE01000081.1| 352042-356930
Melanochromis auratus DNApol ABPL01012872-1012874-1007469
56
Pundamilia nyererei DNApol AFNX01063967.1
Melanochromis auratus DNApol ABPL01012872-1012874-1007469
96
Oreochromis niloticus DNApol gi|1095461974|gb|MKQE01000452.1| 8517-13162 Oreochromis niloticus subtype2 ref
91
Austrofundulus limnaeus DNApol LDAR01S000580.1
Nothobranchius furzeri DNApol LN600656.1f Pundamilia nyererei DNApol AFNX01063967.1
76
Oryzias latipes DNApol ctg7180000005224 1381-6281 Pundamilia nyererei DNApol AFNX01063967.1
32 Oryzias latipes DNApol ctg7180000005625 9856-14757 49 Oryzias latipes DNApol ctg7180000004655 45664-50567
100
53
Oryzias latipes DNApol ctg7180000006263 7671-12570
Oryzias latipes DNApol ctg7180000006520 8797-13700
Austrofundulus limnaeus DNApol LDAR01S000114.1 Kryptolebias marmoratus DNApol LHSH01021468-25413-conju
Oryzias latipes DNApol ctg7180000008353 15651-20483
Oryzias latipes DNApol ctg7180000006392 1048-5949
Oryzias latipes DNApol ctg7180000006021 36765-41661
Oryzias latipes DNApol ctg7180000005635 13383-18284
2 Oryzias latipes DNApol ctg7180000006370 32275-37173
Oryzias latipes DNApol ctg7180000006520 8797-13700
Oryzias latipes DNApol ctg7180000006450 15026-19930
Oryzias latipes DNApol ctg7180000008622 47-3486
Oryzias latipes DNApol ctg7180000005881 2858-7755
Oryzias latipes DNApol ctg7180000005635 13383-18284
Oryzias latipes DNApol ctg7180000005380 8476-13417 32 Oryzias latipes DNApol ctg7180000006866 9979-14877 60 Oryzias latipes DNApol ctg7180000006474 1-3416
47
35Oryzias latipes DNApol ctg7180000006474 1-3416 21
Oryzias latipes DNApol ctg7180000008620 31245-36145
Oryzias latipes DNApol ctg7180000006602 44238-49126
Oryzias latipes DNApol ctg7180000008439 29475-34351
27
Oryzias latipes DNApol ctg7180000005380 8476-13417
35 54 Oryzias latipes DNApol ctg7180000005229 5486-10386 26Oryzias latipes DNApol ctg7180000008405 2908464-2913295
Oryzias latipes DNApol ctg7180000006866 9979-14877
Oryzias latipes DNApol ctg7180000008439 29475-34351
10 Oryzias latipes DNApol ctg7180000006602 44238-49126
93
Oryzias latipes DNApol ctg7180000007973 8-3403
Oryzias latipes DNApol ctg7180000005961 2264-7162
Oryzias latipes DNApol ctg7180000007379 18498-23398
Oryzias latipes DNApol ctg7180000005466 15645-20545
35
Oryzias latipes DNApol ctg7180000005380 8476-13417
Oryzias latipes DNApol ctg7180000006456 10389-15270 28
Oryzias latipes DNApol ctg7180000005635 13383-18284
44 Oryzias latipes DNApol ctg7180000008360 32080-36976 77 51 Oryzias latipes DNApol ctg7180000005633 20546-25351 8
100
49Oryzias latipes DNApol ctg7180000006456 10389-15270
Oryzias latipes DNApol ctg7180000004655 45664-50567
85
Oryzias latipes DNApol ctg7180000006441 4038-8928
98
74
Oryzias latipes DNApol ctg7180000006474 1-3416
18 Oryzias latipes DNApol ctg7180000006386 11127-16027 Oryzias latipes DNApol ctg7180000007379 18498-23398
71
Oryzias latipes DNApol ctg7180000006263 7671-12570 Oryzias latipes DNApol ctg7180000005874 29801-34701
Oryzias latipes DNApol ctg7180000004770 14972-17695 Oryzias latipes DNApol ctg7180000005567 22244-27145
7 Oryzias latipes DNApol ctg7180000008620 31245-36145
99
Oryzias latipes DNApol ctg7180000006392 1048-5949
42Oryzias latipes DNApol ctg7180000004655 45664-50567 34Oryzias latipes DNApol ctg7180000005625 9856-14757
Oryzias latipes DNApol ctg7180000006510 31099-33828
100
Oryzias latipes DNApol ctg7180000006370 32275-37173
100
3
Oryzias latipes DNApol ctg7180000006978 2852-5579
Oryzias latipes subtype1 ref
57
45Oryzias latipes DNApol ctg7180000006455 10222-15125 21Oryzias latipes DNApol ctg7180000006520 8797-13700
100
Oryzias latipes DNApol ctg7180000008207 2935286-2940213
Oryzias latipes DNApol ctg7180000008510 8539-13376
Oryzias latipes DNApol ctg7180000008510 8539-13376 Oryzias latipes DNApol ctg7180000006103 14066-18964
100
Oryzias latipes DNApol ctg7180000006459 9392-13845
Oryzias latipes subtype2 ref Oryzias latipes DNApol ctg7180000008434 20214-23575
100
Oryzias latipes DNApol ctg7180000008622 47-3486
99
60Oryzias latipes subtype2 ref
Oryzias dancena
100
Oryzias latipes DNApol ctg7180000008434 20214-23575
61
Oryzias dancena Oryzias latipes DNApol ctg7180000008207 2935286-2940213
99
Mola mola DNApol KV751352.1
Oryzias dancena
14
Monopterus albus DNApol NW 018128364.1 Oryzias latipes DNApol ctg7180000008434 20214-23575
100
Salmo salar ref Monopterus albus DNApol NW 018128364.1
80 Oryzias latipes subtype2 ref
100
Salmo salar DNApol gb|AGKD04000035.1| 89103-91247 66 85 Salmo salar DNApol gb|AGKD04000114.1| 2103907-2110199
Salmo salar DNApol gb|AGKD04000303.1| 39611-44333
100
100 Oryzias latipes DNApol ctg7180000008207 2935286-2940213
100
59 Salmo salar DNApol gb|AGKD04000107.1| 12266-16894
Salmo salar DNApol gb|AGKD04026083.1| 5021-7789
Mola mola DNApol KV751352.1
100
Salmo salar DNApol gb|AGKD04031988.1| 1338-5543 47 Salmo salar DNApol gb|AGKD04000303.1| 39611-44333 99 Salmo salar ref
Salmo salar DNApol gb|AGKD04000080.1| 67995-70103
78
Monopterus albus DNApol NW 018128364.1
96
39
Salmo salar DNApol gb|AGKD04031988.1| 1338-5543
76
99 Salmo salar ref
100
Oncorhynchus kisutch DNApol NW 018089303.1
67
Oncorhynchus mykiss DNApol CM007943.1-2
Salmo salar DNApol gb|AGKD04000107.1| 12266-16894
15
Salmo salar DNApol gb|AGKD04000303.1| 39611-44333
46
98
Salmo salar DNApol gb|AGKD04000476.1| 197734-202679
Salmo salar DNApol gb|AGKD04000855.1| 390144-392762
95
Salmo salar DNApol gb|AGKD04026083.1| 5021-7789
65
Oncorhynchus mykiss DNApol CM007935.1
100
Salmo salar DNApol gb|AGKD04000114.1| 2103907-2110199
41 100 35
31 Salmo salar DNApol gb|AGKD04031988.1| 1338-5543
82
Oncorhynchus mykiss DNApol CM007935.1
59
86
Oncorhynchus mykiss DNApol CM007943.1-2 Salmo salar DNApol gb|AGKD04000855.1| 390144-392762
95 53 Salmo salar DNApol gb|AGKD04000107.1| 12266-16894 36 Salmo salar DNApol gb|AGKD04000114.1| 2103907-2110199
Esox lucius DNApol AZJR02001005.1 Salmo salar DNApol gb|AGKD04000476.1| 197734-202679
38
Oncorhynchus kisutch DNApol NW 018089303.1
79 43
Esox lucius DNApol AZJR02000460.1
48
Esox lucius DNApol AZJR02001005.1
52
Salmo salar DNApol gb|AGKD04000080.1| 67995-70103
54
Cottus rhenanus DNApol LKTN01013170-11045298-1052575 53
Esox lucius DNApol AZJR02000460.1
100
Salmo salar DNApol gb|AGKD04000476.1| 197734-202679
100
Monopterus albus DNApol NW 018128515.1 Labrus bergylta DNApol FKLU01000277.1
38
Labrus bergylta DNApol FKLU01000277.1
50
Oncorhynchus kisutch DNApol NW 018089303.1
81 57 100
63
Cottus rhenanus DNApol LKTN01013170-11045298-1052575
70
Esox lucius DNApol AZJR02000460.1
90
100Cynoglossus semilaevis DNApol CM002393.1m
100 Monopterus albus DNApol NW 018128371.1
Cynoglossus semilaevis DNApol CM002393.1m
Monopterus albus DNApol NW 018128542.1
Cottus rhenanus DNApol LKTN01013170-11045298-1052575 89
Cynoglossus semilaevis DNApol CM002393.1g
47
96
Monopterus albus DNApol NW 018128371.1
100
Labrus bergylta DNApol FKLU01000277.1 100
Cynoglossus semilaevis DNApol CM002393.1c
Larimichthys croceaDNApol gi|808886158|gb|KQ040940.1| 59129-64084 Cynoglossus semilaevis DNApol CM002393.1g
Monopterus albus DNApol NW 018128542.1
62
55 Larimichthys crocea ref
Larimichthys croceaDNApol gi|808879058|gb|KQ041413.1| 29544-34610 Larimichthys croceaDNApol gi|808859982|gb|KQ042671.1| 159082-164132
100
Monopterus albus DNApol NW 018128371.1
80
44 Larimichthys croceaDNApol gi|808886158|gb|KQ040940.1| 59129-64084
Larimichthys croceaDNApol gi|808857396|gb|KQ042839.1| 29294-34360
63 99
52
Larimichthys crocea ref
96
100
91 Larimichthys croceaDNApol gi|808857396|gb|KQ042839.1| 29294-34360 76 Larimichthys crocea ref
100
15Larimichthys croceaDNApol gi|808879058|gb|KQ041413.1| 29544-34610 100Larimichthys croceaDNApol gi|808857396|gb|KQ042839.1| 29294-34360
Pampus argenteus DNApol JHEK01006214-1219620-1268819-1283866-1296196 37
Larimichthys croceaDNApol gi|808879058|gb|KQ041413.1| 29544-34610
59
Larimichthys croceaDNApol gi|808859982|gb|KQ042671.1| 159082-164132
Austrofundulus limnaeus DNApol LDAR01S000580.1
100
Pampus argenteus DNApol JHEK01006214-1219620-1268819-1283866-1296196
Pampus argenteus DNApol JHEK01006214-1219620-1268819-1283866-1296196
92
Austrofundulus limnaeus DNApol LDAR01S000114.1
Cynoglossus semilaevis DNApol CM002393.1g
100
Amphilophus citrinellus DNApol CCOE01000729.1
Kryptolebias marmoratus DNApol LHSH01021468-25413-conju
81
Larimichthys croceaDNApol gi|808886158|gb|KQ040940.1| 59129-64084
100
Periophthalmus magnuspinnatus DNApol KN460998.1
46
Periophthalmus magnuspinnatus DNApol KN460998.1
100 Cynoglossus semilaevis DNApol CM002393.1m 100
Boleophthalmus pectinirostris DNApol KN522026.1
Amphilophus citrinellus DNApol CCOE01000729.1
Amphilophus citrinellus DNApol CCOE01000729.1 Periophthalmus magnuspinnatus DNApol KN460998.1
44 Oreochromis niloticus DNApol gi|1095462411|gb|MKQE01000015.1| 40209135-40213840
Oreochromis niloticus DNApol gi|1095461355|gb|MKQE01001071.1| 15087-19987
60 Oreochromis niloticus DNApol gi|1095461916|gb|MKQE01000510.1| 34-4219 50Oreochromis niloticus DNApol gi|1095462398|gb|MKQE01000028.1| 11831-16743
Oreochromis niloticus DNApol gi|1095461865|gb|MKQE01000561.1| 12576-17438 Oreochromis niloticus DNApol gi|1095462398|gb|MKQE01000028.1| 11831-16743 Oreochromis niloticus DNApol gi|1095462411|gb|MKQE01000015.1| 40209135-40213840
0.050
0.050
Oreochromis niloticus DNApol gi|1095462236|gb|MKQE01000190.1| 161064-165900
32 84
Oreochromis niloticus DNApol gi|1095461355|gb|MKQE01001071.1| 15087-19987 Oreochromis niloticus DNApol gi|1095461865|gb|MKQE01000561.1| 12576-17438
32 Oreochromis niloticus DNApol gi|1095462398|gb|MKQE01000028.1| 11831-16743 82 Oreochromis niloticus DNApol gi|1095462411|gb|MKQE01000015.1| 40209135-40213840
0.050
Sequences used for phylogenetic trees in Fig.1b and Fig. 4b
Sequences used for phylogenetic trees in Supplementary Fig.1 and 2
Figure S1
Sequences same as those in Fig. 2
Capsid triplex protein
DNA helicase
Full (116-1758)
Full (2-863)
Morone saxatilis triplex JTCL01034785.1
Pampus argenteus DNAhel JHEK01264794.1
99
Monopterus albus triplex NW 018128371.1
Larimichthys crocea DNAhel gi|808886158|gb|KQ040940.1| 2-1554 Larimichthys crocea DNAhel gi|808859437|gb|KQ042683.1| 22987-24702
99
Mola mola triplex KV751317.1
97
37
Larimichthys crocea DNAhel ref
82
24
Cynoglossus semilaevis triplex CM002393.1k
Larimichthys crocea DNAhel gi|808886841|gb|KQ040886.1| 2111-3829
55
42
Pampus argenteus triplex JHEK01287094.1 Larimichthys crocea Larimichthys crocea triplex gi|808865363|gb|KQ042289.1| 450752-451618
92
Mola mola DNAhel KV751337.1
80
Larimichthys crocea triplex ref 25 82 Larimichthys crocea triplex gi|808859982|gb|KQ042671.1| 116986-117570
Salmo salar DNAhel gb|AGKD04010878.1| 35810-37528
99 99
Cottus rhenanus triplex LKTN01040405.1 Esox lucius triplex AZJR02000016.1
79
Monopterus albus DNAhel NW 018128364.1
Oncorhynchus kisutch triplex NC 034181.1
54
Mola mola DNAhel KV751352.1
Oncorhynchus kisutch triplex NW 018089301.1
58
Mola mola DNAhel KV751333.1
92
99
84 Salmo salar triplex gb|AGKD04011643.1| 7455-8309 65 Salmo salar triplex ref
Oryzias latipes DNAhel ctg7180000008207 2871990-2873771
Monopterus albus triplex NW 018128364.1
65
Oryzias latipes DNAhel ctg7180000005928 24326-26107
Mola mola triplex KV751352.1
Oryzias latipes DNAhel ctg7180000008635 13658-15439
Mola mola triplex KV751333.1
99
60 Oryzias latipes DNAhel ctg7180000008441 33350-35115
99
Salmo salar triplex gb|AGKD04023361.1| 2244-3098
99
Oryzias latipes DNAhel ctg7180000005870 37940-39721
99
Salmo salar triplex gb|AGKD04010878.1| 38157-39011
99
Oryzias dancena DNAhel Oryzias latipes DNAhel subtype2 ref
94
Cottus rhenanus triplex LKTN01075724.1
99
Salmo salar DNAhel gb|AGKD04023361.1| 3743-5461
66 Salmo salar DNAhel ref 74 Salmo salar DNAhel gb|AGKD04011643.1| 5092-6810
99
Larimichthys crocea triplex gi|808886158|gb|KQ040940.1| 14260-15126
48
Oncorhynchus kisutch DNAhel NW 018089301.1
98
Larimichthys crocea triplex gi|808886158|gb|KQ040940.1| 15909-16775
31
Oncorhynchus kisutch DNAhel NC 034181.1
42
Larimichthys crocea triplex gi|808886841|gb|KQ040886.1| 16654-17520
26
41
Esox lucius DNAhel AZJR02000016.1
43
Larimichthys crocea triplex gi|808859437|gb|KQ042683.1| 9254-10120
27
Monopterus albus DNAhel NW 018128371.1 Cottus rhenanus DNAhel LKTN01041610-1042261
33
Larimichthys crocea triplex gi|808865363|gb|KQ042289.1| 422605-423471
77
Mola mola DNAhel KV751317.1
99
Oryzias dancena triplex
Oryzias latipes DNAhel ctg7180000005561 36507-38272
Oryzias latipes triplex ctg7180000005870 40250-41119
Oryzias latipes DNAhel ctg7180000005542 11519-13285
91
Oryzias latipes DNAhel ctg7180000005425 1-1494
99
99
Oryzias latipes DNAhel ctg7180000005517 7156-8923 Oryzias latipes DNAhel ctg7180000005561 30549-32314
Oryzias latipes triplex ctg7180000005460 22457-23326 Oryzias latipes triplex ctg7180000005420 50248-51117
Oryzias latipes DNAhel ctg7180000005496 36227-37993
Oryzias latipes triplex ctg7180000005517 9456-10325
Oryzias latipes DNAhel ctg7180000005542 17478-19244 Oryzias latipes DNAhel ctg7180000005552 6249-8015
61
Oryzias latipes DNAhel ctg7180000008506 11815-13581 93
Oryzias latipes DNAhel ctg7180000008407 12285-14052 65
Oryzias latipes DNAhel ctg7180000008928 7445-9211 Oryzias latipes DNAhel ctg7180000005545 7034-8800
Oryzias latipes triplex ctg7180000005425 2032-2900
Oryzias latipes DNAhel ctg7180000005540 34244-36009
99 Oryzias latipes triplex ctg7180000005447 32603-33471
Oryzias latipes DNAhel ctg7180000008301 4529-6293
Oryzias latipes triplex ctg7180000005561 38804-39672
Oryzias latipes DNAhel subtype1 73I9 ref
Oryzias latipes triplex ctg7180000008928 6041-6910
Oryzias latipes DNAhel ctg7180000005420 51649-53406
Oryzias latipes triplex ctg7180000006849 34518-35387
Austrofundulus limnaeus DNAhel LDAR01S000114.1
Oryzias latipes triplex ctg7180000005542 10117-10986
Kryptolebias marmoratus DNAhel LHSH01023747.1
61 Oryzias latipes triplex ctg7180000005542 16076-16946
Amphilophus citrinellus DNAhel CCOE01000729.1 Periophthalmus magnuspinnatus DNAhel KN460998.1
Oryzias latipes triplex ctg7180000005540 36538-37407
Nothobranchius furzeri DNAhel LN600656.1e
Oryzias latipes triplex ctg7180000005496 34828-35697
Pundamilia nyererei DNAhel AFNX01064622.1
Oryzias latipes triplex ctg7180000005401 31149-32018
Oreochromis niloticus DNAhel gi|1095462412|gb|MKQE01000014.1| 13839483-13841204
99
Oryzias latipes triplex ctg7180000005561 32849-33717
Oreochromis niloticus DNAhel subtype2 ref
53
Oryzias latipes triplex ctg7180000004811 68002-68871
99 Oreochromis niloticus DNAhel gi|1095462215|gb|MKQE01000211.1| 25624-27373
50
Oreochromis niloticus DNAhel gi|1095460077|gb|MKQE01002349.1| 6159-7852 99 89
Periophthalmus magnuspinnatus triplex KN460998.1
Oreochromis niloticus DNAhel gi|1095462409|gb|MKQE01000017.1| 52038568-52040305
Neolamprologus brichardi DNAhel JH422345.1
46 37
Nothobranchius furzeri triplex KN850033.1
60
Oreochromis niloticus DNAhel gi|1095462326|gb|MKQE01000100.1| 7806-9535
45 91 Oreochromis niloticus DNAhel gi|1095462411|gb|MKQE01000015.1| 40355698-40357434
99 Nothobranchius furzeri triplex LN600656.1d 97
Pundamilia nyererei triplex AFNX01064459.1
Neolamprologus brichardi DNAhel JH422622.1
65 97 27
Kryptolebias marmoratus triplex LHSH01028521.1 Amphilophus citrinellus triplex CCOE01000729.1
55
Rhamphochromis esox DNAhel ABPN01022120-1023627 67
Austrofundulus limnaeus triplex LDAR01S000114.1
99
Oreochromis niloticus DNAhel gi|1095462313|gb|MKQE01000113.1| 95360-96544
99
Oryzias latipes triplex ctg7180000008506 14115-14984
62 Oryzias latipes triplex ctg7180000008301 3126-3996
Oryzias latipes DNAhel ctg7180000007103 4900-6665
93
Oryzias latipes triplex ctg7180000008407 10882-11751
Oryzias latipes triplex ctg7180000007103 7202-8071
Oryzias latipes DNAhel ctg7180000005401 32550-34316
49
Oryzias latipes triplex ctg7180000005545 5633-6502
Oryzias latipes triplex subtype1 73I9 ref
Oryzias latipes DNAhel ctg7180000005537 4582-6348
99
Oryzias latipes triplex ctg7180000005537 6880-7749 Oryzias latipes triplex ctg7180000005552 8550-9419
18
Oryzias latipes DNAhel ctg7180000006849 35924-37690
39
Oryzias latipes triplex ctg7180000008207 2874300-2875169 Oryzias latipes triplex subtype2 ref
99
Oryzias latipes DNAhel ctg7180000004811 65700-67466 76
Oryzias latipes triplex ctg7180000005928 26636-27505 Oryzias latipes triplex ctg7180000008635 12260-13129
Oryzias latipes DNAhel ctg7180000005447 30303-32068
71
Pampus argenteus triplex JHEK01262475.1
87 98
50 Larimichthys crocea DNAhel gi|808865363|gb|KQ042289.1| 435844-437562 42 Larimichthys crocea DNAhel gi|808859982|gb|KQ042671.1| 94184-103206
88
Oreochromis niloticus triplex gi|1095462412|gb|MKQE01000014.1| 13838314-13838973
99
Haplochromis burtoni DNAhel JH426215.1
79
Haplochromis burtoni DNAhel JH426136.1
Oreochromis niloticus triplex gi|1095462215|gb|MKQE01000211.1| 24272-25135
96 Oreochromis niloticus triplex subtype2 ref
34 Oreochromis niloticus DNAhel gi|1095462208|gb|MKQE01000218.1| 135516-137188
Oreochromis niloticus triplex gi|1095462313|gb|MKQE01000113.1| 93901-94764
Oreochromis niloticus DNAhel gi|1095462424|gb|MKQE01000002.1| 17224807-17226447
97
Melanochromis auratus triplex EQ186879.1
99 Oreochromis niloticus DNAhel subtype1 ref 53 57
38
Oreochromis niloticus DNAhel gi|1095462345|gb|MKQE01000081.1| 334823-334347 99
Oreochromis niloticus DNAhel gi|1095462163|gb|MKQE01000263.1| 2841-4308
49 Oreochromis niloticus DNAhel gi|1095461906|gb|MKQE01000520.1| 7601-9366 92 Oreochromis niloticus DNAhel gi|1095462344|gb|MKQE01000082.1| 286562-288180
Neolamprologus brichardi triplex JH422345.1 Neolamprologus brichardi triplex JH422622.1
69 14
Haplochromis burtoni triplex JH426215.1
95 23 85
0.050
Haplochromis burtoni triplex JH426136.1 Oreochromis niloticus triplex gi|1095460077|gb|MKQE01002349.1| 8399-9001
Oreochromis niloticus triplex gi|1095462411|gb|MKQE01000015.1| 40358133-40358786 60 48 Oreochromis niloticus triplex gi|1095462326|gb|MKQE01000100.1| 10025-10417 Oreochromis niloticus triplex gi|1095462163|gb|MKQE01000263.1| 4868-5659 Oreochromis niloticus triplex gi|1095462424|gb|MKQE01000002.1| 17223728-17224324
79 46 23 17
Oreochromis niloticus triplex gi|1095462208|gb|MKQE01000218.1| 134163-134954 Oreochromis niloticus triplex subtype1 ref Oreochromis niloticus triplex gi|1095462345|gb|MKQE01000081.1| 332994-333857
14 Oreochromis niloticus triplex gi|1095462344|gb|MKQE01000082.1| 285506-285895 50 Oreochromis niloticus triplex gi|1095461906|gb|MKQE01000520.1| 9853-10716
0.050
Sequences used for phylogenetic trees in Fig.1b and Fig. 4b
Sequences used for phylogenetic trees in Supplementary Fig.1 and 2
Figure S1 (continued)
Sequences same as those in Fig. 2
Major capsid protein
Full (96-3443)
First half (96-1679)
Second half (1680-3443)
100
100
Monopterus albus NW 018128371.1
73
Salmo salar MCP gb|AGKD04000133.1| 3032232-3037299
100
100
Oryzias latipes MCP ctg7180000008207 2894110-2897546
68
Oryzias dancena
Oryzias latipes MCP ctg7180000005552 26991-30449
87
Oryzias latipes MCP ctg7180000005401 9111-12568
97
Nothobranchius furzeri LN600656.1a
75
100
71
Oreochromis niloticus MCP gi|1095462412|gb|MKQE01000014.1| 13856613-13859894
100
92
Melanochromis auratus ABPL01008794.1
46 Oreochromis niloticus MCP gi|1095462345|gb|MKQE01000081.1| 370186-373546 52 100
40 50
21 36 78
Oreochromis niloticus MCP gi|1095462412|gb|MKQE01000014.1| 13856613-13859894 Pundamilia nyererei AFNX01065126.1 53
98
Neolamprologus brichardi JH422345.1
55
Rhamphochromis esox ABPN01040821.1 99
Oreochromis niloticus MCP gi|1095462344|gb|MKQE01000082.1| 326694-328739
75 Oreochromis niloticus MCP gi|1095461482|gb|MKQE01000944.1| 2127-5487 39
Oreochromis niloticus subtype1 ref
9229
100
Oreochromis niloticus MCP gi|1095461287|gb|MKQE01001139.1| 5869-8948
69
Oreochromis niloticus MCP gi|1095462149|gb|MKQE01000277.1| 84616-87395 Oreochromis niloticus MCP gi|1095462411|gb|MKQE01000015.1| 40227210-40230578
42
Oreochromis niloticus MCP gi|1095461482|gb|MKQE01000944.1| 2127-5487
29
90 Oreochromis niloticus MCP gi|1095460593|gb|MKQE01001833.1| 6-2333
79 Oreochromis niloticus MCP gi|1095461287|gb|MKQE01001139.1| 5869-8948 61 98 48
Oreochromis niloticus MCP gi|1095461903|gb|MKQE01000523.1| 15502-18839
54
Oreochromis niloticus MCP gi|1095462345|gb|MKQE01000081.1| 370186-373546
38 35 48
Oreochromis niloticus MCP gi|1095462344|gb|MKQE01000082.1| 326694-328739 Oreochromis niloticus MCP gi|1095461903|gb|MKQE01000523.1| 15502-18839 Oreochromis niloticus subtype1 ref Oreochromis niloticus MCP gi|1095462170|gb|MKQE01000256.1| 1571-4881
65 Oreochromis niloticus MCP gi|1095461968|gb|MKQE01000458.1| 3596-6964
0.050
0.050
Oreochromis niloticus MCP gi|1095462411|gb|MKQE01000015.1| 40227210-40230578 Oreochromis niloticus MCP gi|1095461482|gb|MKQE01000944.1| 2127-5487 Oreochromis niloticus MCP gi|1095461916|gb|MKQE01000510.1| 35779-38896
Oreochromis niloticus subtype1 ref
59 Oreochromis niloticus MCP gi|1095461968|gb|MKQE01000458.1| 3596-6964 57 Oreochromis niloticus MCP gi|1095462170|gb|MKQE01000256.1| 1571-4881
48 Oreochromis niloticus MCP gi|1095461287|gb|MKQE01001139.1| 5869-8948
Oreochromis niloticus MCP gi|1095462149|gb|MKQE01000277.1| 84616-87395 51 Oreochromis niloticus MCP gi|1095460593|gb|MKQE01001833.1| 6-2333
Oreochromis niloticus MCP gi|1095462411|gb|MKQE01000015.1| 40227210-40230578 Oreochromis niloticus MCP gi|1095462149|gb|MKQE01000277.1| 84616-87395
Oreochromis niloticus MCP gi|1095461916|gb|MKQE01000510.1| 35779-38896
Neolamprologus brichardi JH423218.1
84
Oreochromis niloticus MCP gi|1095461916|gb|MKQE01000510.1| 35779-38896
Oreochromis niloticus MCP gi|1095462170|gb|MKQE01000256.1| 1571-4881
Haplochromis burtoni JH426215.1 Melanochromis auratus ABPL01008794.1
100
Neolamprologus brichardi JH422345.1
77 100
Oreochromis niloticus MCP gi|1095461903|gb|MKQE01000523.1| 15502-18839 96
Nothobranchius furzeri LN600656.1a
Oreochromis niloticus MCP gi|1095462313|gb|MKQE01000113.1| 62796-65149 61
21 Oreochromis niloticus MCP gi|1095461968|gb|MKQE01000458.1| 3596-6964
Nothobranchius furzeri LN601583.1 Nothobranchius furzeri LN601236.1
99 Oreochromis niloticus subtype2 ref 100 Oreochromis niloticus MCP gi|1095462215|gb|MKQE01000211.1| 50073-53459
Pundamilia nyererei AFNX01064599.1
27
Nothobranchius furzeri LN600656.1a
100
Nothobranchius furzeri LN601583.1
Haplochromis burtoni JH426215.1 Neolamprologus brichardi JH422345.1
100
Oryzias latipes MCP ctg7180000005425 21966-25424 Oryzias latipes MCP ctg7180000005496 7358-10817 100
Pundamilia nyererei JH419919.1
Oreochromis niloticus MCP gi|1095462313|gb|MKQE01000113.1| 62796-65149 100 98
Oryzias latipes MCP ctg7180000005420 18357-21815
Oreochromis niloticus MCP gi|1095462412|gb|MKQE01000014.1| 13856613-13859894
97 Oreochromis niloticus MCP gi|1095462215|gb|MKQE01000211.1| 50073-53459 64
Oryzias latipes MCP ctg7180000008361 25692-29150
Oryzias latipes MCP ctg7180000005420 18357-21815
Oreochromis niloticus MCP gi|1095462215|gb|MKQE01000211.1| 50073-53459
100
Oreochromis niloticus subtype2 ref
64
Oryzias latipes MCP ctg7180000005552 26991-30449
100 Oreochromis niloticus subtype2 ref
Pundamilia nyererei JH419919.1
Oryzias latipes MCP ctg7180000005401 9111-12568 Oryzias latipes MCP ctg7180000008297 8352-11810
18 Oryzias latipes MCP ctg7180000006576 22-1376
Pundamilia nyererei AFNX01064599.1
Oryzias latipes subtype1 73I9 ref
84 Oryzias latipes MCP ctg7180000007103 24975-28432
19 Oryzias latipes MCP ctg7180000005496 7358-10817
Nothobranchius furzeri LN601583.1
Oryzias latipes MCP ctg7180000006849 13263-16718
100
72 Oryzias latipes MCP ctg7180000008361 25692-29150
Oryzias latipes MCP ctg7180000005496 7358-10817
Oryzias latipes MCP ctg7180000005420 31298-32823
87
Oryzias latipes MCP ctg7180000006849 13263-16718
Oryzias latipes MCP ctg7180000005420 18357-21815
Oryzias latipes MCP ctg7180000008441 19759-20784
Oryzias latipes MCP ctg7180000005552 26991-30449
Oryzias latipes MCP ctg7180000005401 9111-12568
Oryzias latipes MCP ctg7180000007103 24975-28432 10070
80 Oryzias latipes MCP ctg7180000008361 25692-29150
60
74 Oryzias latipes MCP ctg7180000008297 8352-11810 88 Oryzias latipes MCP ctg7180000005425 21966-25424 87 67
Oryzias latipes MCP ctg7180000008207 2894110-2897546
72
Oryzias latipes subtype1 73I9 ref
Oryzias latipes MCP ctg7180000006849 13263-16718
96
100 Oryzias latipes subtype2 ref 100
Oryzias latipes MCP ctg7180000008207 2894110-2897546 100
Oryzias latipes subtype1 73I9 ref
100
Oryzias dancena 90
100 Oryzias latipes subtype2 ref
100
83 Oryzias latipes MCP ctg7180000007103 24975-28432 100
96
Monopterus albus NW 018128364.1 Mola mola KV751352.1
99
Mola mola KV751352.1
76 Oryzias latipes MCP ctg7180000008297 8352-11810
Salmo salar ref
74
Monopterus albus NW 018128364.1
92 Oryzias latipes MCP ctg7180000005425 21966-25424 93
88
81 Salmo salar MCP gb|AGKD04113713.1| 1-1375
Salmo salar MCP gb|AGKD04050436.1| 92-3238
Oryzias dancena
100
Salmo salar MCP gb|AGKD04050436.1| 92-3238
76 Salmo salar MCP gb|AGKD04011649.1| 36899-40302 25 Salmo salar ref
Mola mola KV751352.1
69
Salmo salar MCP gb|AGKD04000863.1| 266703-267823 Salmo salar MCP gb|AGKD04011649.1| 36899-40302
71 Salmo salar MCP gb|AGKD04106160.1| 26-1380 55
Salmo salar MCP gb|AGKD04000133.1| 3032232-3037299
67
100 Oryzias latipes subtype2 ref
82 94 Salmo salar MCP gb|AGKD04004447.1| 3-3111
99
Salmo salar MCP gb|AGKD04004447.1| 3-3111
94
Monopterus albus NW 018128364.1
100
100
Salmo salar MCP gb|AGKD04032681.1| 1145-2834
72
Salmo salar ref 91 26 Salmo salar MCP gb|AGKD04011649.1| 36899-40302
100
Salmo salar MCP gb|AGKD04000133.1| 3032232-3037299
Oncorhynchus kisutch NW 018089301.1
88
Salmo salar MCP gb|AGKD04050436.1| 92-3238
100
Oncorhynchus kisutch NW 018089301.1
55
Salmo salar MCP gb|AGKD04001239.1| 35580-40177
94
Salmo salar MCP gb|AGKD04004447.1| 3-3111
96 100
99
Esox lucius AZJR02000281.1
Salmo salar MCP gb|AGKD04001239.1| 35580-40177 Oncorhynchus kisutch NW 018089301.1
96
Salmo salar MCP gb|AGKD04001239.1| 35580-40177
96
Maccullochella peelii LKNJ01007069.1
67
Esox lucius AZJR02000305.1 Esox lucius AZJR02000281.1
Cottus rhenanus LKTN01070193.1 100
Esox lucius AZJR02000281.1 83
Monopterus albus NW 018128515.1 Monopterus albus NW 018128371.1
35 100
Cottus rhenanus LKTN01023127-27348-26324-00480-07756-38775-conjugate
100
Cottus rhenanus LKTN01070193.1 25
63
Monopterus albus NW 018128289.1
29
Cottus rhenanus LKTN01023127-27348-26324-00480-07756-38775-conjugate
100 96
Monopterus albus NW 018128289.1 100
Monopterus albus NW 018128371.1
100
Monopterus albus NW 018128289.1 Monopterus albus NW 018128515.1
61 Larimichthys crocea ref 63 Larimichthys crocea MCP gi|808865363|gb|KQ042289.1| 361197-364610
41 Larimichthys crocea MCP gi|808865363|gb|KQ042289.1| 361197-364610 39 Larimichthys crocea MCP gi|808859982|gb|KQ042671.1| 42600-45194
82
Larimichthys crocea MCP gi|808887557|gb|KQ040835.1| 54760-57839
98 55
Larimichthys crocea ref
79
Larimichthys crocea MCP gi|808859982|gb|KQ042671.1| 35416-36693
49
33
Larimichthys crocea MCP gi|808859982|gb|KQ042671.1| 50398-51354
96
Larimichthys crocea MCP gi|808867717|gb|KQ042190.1| 97845-100908
98
100
Larimichthys crocea MCP gi|808887557|gb|KQ040835.1| 54760-57839
98
Larimichthys crocea ref
Larimichthys crocea MCP gi|808859982|gb|KQ042671.1| 42600-45194 76 53 Larimichthys crocea MCP gi|808865363|gb|KQ042289.1| 361197-364610
100 47
Pampus argenteus JHEK01057447.1
64
Pampus argenteus JHEK01268578.1
100 Lates calcarifer LLXD01000543.1
Larimichthys crocea MCP gi|808867717|gb|KQ042190.1| 97845-100908
Larimichthys crocea MCP gi|808859982|gb|KQ042671.1| 35416-36693
79
83
Cynoglossus semilaevis CM002393.1e
Pampus argenteus JHEK01268578.1
14
59
100
Lates calcarifer LBLR01001639.1
Larimichthys crocea MCP gi|808867717|gb|KQ042190.1| 97845-100908 65
Lates calcarifer LBLR01001639.1
95
Cynoglossus semilaevis CM002393.1b
67
Lates calcarifer LLXD01000543.1 Lates calcarifer LBLR01001639.1
91
Cottus rhenanus LKTN01023127-27348-26324-00480-07756-38775-conjugate
Morone saxatilis JTCL01027894.1 100
Morone saxatilis JTCL01027894.1
96
Amphilophus citrinellus CCOE01000729.1
Periophthalmus magnuspinnatus KN460998.1
Amphilophus citrinellus CCOE01000729.1 100
Periophthalmus magnuspinnatus KN460998.1
52
Amphilophus citrinellus CCOE01000729.1
Periophthalmus magnuspinnatus KN460998.1
33
Austrofundulus limnaeus LDAR01S000114.1 Kryptolebias marmoratus LHSH01008479.1
Kryptolebias marmoratus LHSH01008479.1
Kryptolebias marmoratus LHSH01008479.1
52 Oreochromis niloticus MCP gi|1095462345|gb|MKQE01000081.1| 370186-373546
0.050
Sequences used for phylogenetic trees in Fig.1b and Fig. 4b
Austrofundulus limnaeus LDAR01S001611.1
96
Austrofundulus limnaeus LDAR01S000114.1
91
Austrofundulus limnaeus LDAR01S000114.1
100
Austrofundulus limnaeus LDAR01S001611.1
100 47
Austrofundulus limnaeus LDAR01S001611.1
100 94
Sequences used for phylogenetic trees in Supplementary Fig.1 and 2
Figure S1 (continued)
Sequences same as those in Fig. 2
Membrane glycoprotein
Full (300-3882)
First half (300-2324)
Monopterus albus MemGly NW 018128371.1
100
Monopterus albus MemGly NW 018128371.1
Monopterus albus MemGly NW 018127912.1 Larimichthys crocea MemGly gi|808865363|gb|KQ042289.1| 438905-441268
100
99
52
100 99
Oncorhynchus kisutch MemGly NW 018089555.1
100
89 Salmo salar MemGly gb|AGKD04031934.1| 457-1755
89
Oryzias dancena MemGly
100
100
Oryzias latipes MemGly ctg7180000008207 2884299-2888366
33 64
Oryzias latipes MemGly ctg7180000005552 16887-20958
89
93
Oryzias latipes MemGly ctg7180000008441 26368-30456 Oryzias latipes MemGly ctg7180000007103 14526-18594
44
22
79 93 91
Oreochromis niloticus MemGly gi|1095461865|gb|MKQE01000561.1| 1787-5643
87
Neolamprologus brichardi MemGly JH422345.1
65 47
Oreochromis niloticus MemGly gi|1095462344|gb|MKQE01000082.1| 321221-324147
46 66
Oreochromis niloticus MemGly gi|1095462345|gb|MKQE01000081.1| 364045-367790
Nothobranchius furzeri MemGly LN600656.1 100
Oreochromis niloticus MemGly gi|1095462398|gb|MKQE01000028.1| 1202-4924 Oreochromis niloticus MemGly gi|1095460593|gb|MKQE01001833.1| 5132-8993
Melanochromis auratus MemGly ABPL01007000-1011152-conju 64 Oreochromis niloticus MemGly gi|1095462344|gb|MKQE01000082.1| 321221-324147 89 Oreochromis niloticus MemGly gi|1095462345|gb|MKQE01000081.1| 364045-367790
Oreochromis niloticus MemGly gi|1095462149|gb|MKQE01000277.1| 89781-93624
100
Neolamprologus brichardi MemGly JH422345.1
Oreochromis niloticus1 MemGly ref 71
Oreochromis niloticus MemGly gi|1095461916|gb|MKQE01000510.1| 11211-15062 Oreochromis niloticus MemGly gi|1095461916|gb|MKQE01000510.1| 29529-33380
Neolamprologus brichardi MemGly JH422644.1
Oreochromis niloticus MemGly gi|1095462398|gb|MKQE01000028.1| 1202-4924
56
99 Oreochromis niloticus MemGly gi|1095461916|gb|MKQE01000510.1| 11211-15062 42 Oreochromis niloticus MemGly gi|1095461916|gb|MKQE01000510.1| 29529-33380 99 53
Oreochromis niloticus MemGly gi|1095462411|gb|MKQE01000015.1| 40220952-40224814
0.050
Oreochromis niloticus1 MemGly ref 60 84
Oreochromis niloticus MemGly gi|1095462411|gb|MKQE01000015.1| 40220952-40224814
79
Oreochromis niloticus MemGly gi|1095461903|gb|MKQE01000523.1| 10723-14419
69
Oreochromis niloticus MemGly gi|1095462411|gb|MKQE01000015.1| 40220952-40224814
44 Oreochromis niloticus MemGly gi|1095461916|gb|MKQE01000510.1| 29529-33380 84
46
Haplochromis burtoni MemGly JH426215.1
67 78
100 98 Oreochromis niloticus MemGly gi|1095461916|gb|MKQE01000510.1| 11211-15062
78
Oreochromis niloticus MemGly gi|1095462215|gb|MKQE01000211.1| 14278-17232 Oreochromis niloticus MemGly gi|1095462412|gb|MKQE01000014.1| 13825766-13829526
32
Oreochromis niloticus MemGly gi|1095461287|gb|MKQE01001139.1| 11672-15525
Oreochromis niloticus MemGly gi|1095461903|gb|MKQE01000523.1| 10723-14419 40
Oryzias latipes MemGly ctg7180000006849 23093-26792
99 Oreochromis niloticus2 MemGly ref
Oreochromis niloticus MemGly gi|1095462236|gb|MKQE01000190.1| 172928-175847
Melanochromis auratus MemGly ABPL01007000-1011152-conju
98
82
Oreochromis niloticus MemGly gi|1095460593|gb|MKQE01001833.1| 5132-8993 99
Haplochromis burtoni MemGly JH426215.1 100
Oreochromis niloticus MemGly gi|1095462345|gb|MKQE01000081.1| 364045-367790
Oreochromis niloticus MemGly gi|1095462398|gb|MKQE01000028.1| 1202-4924
100
Oreochromis niloticus MemGly gi|1095462215|gb|MKQE01000211.1| 14278-17232 Oreochromis niloticus MemGly gi|1095462412|gb|MKQE01000014.1| 13825766-13829526
99
Oryzias latipes MemGly ctg7180000005420 38270-41321
59 Oryzias latipes MemGly ctg7180000005420 27334-30668
Pundamilia nyererei MemGly AFNX01064659-1065346-conju
Oreochromis niloticus MemGly gi|1095462344|gb|MKQE01000082.1| 321221-324147 100
Nothobranchius furzeri MemGly LN600656.1
61
Oryzias latipes MemGly ctg7180000005496 21953-26035 69 Oryzias latipes MemGly ctg7180000007103 14526-18594 58
Oreochromis niloticus2 MemGly ref
Neolamprologus brichardi MemGly JH422345.1
Austrofundulus limnaeus MemGly LDAR01S001611.1
Pundamilia nyererei MemGly AFNX01064659-1065346-conju
78
Oryzias latipes MemGly ctg7180000005517 18685-20985
Melanochromis auratus MemGly ABPL01007000-1011152-conju
50
Oryzias latipes MemGly ctg7180000008506 23786-27855
Oryzias latipes MemGly ctg7180000005537 16580-20650
Nothobranchius furzeri MemGly LN600656.1
100
Oryzias latipes MemGly ctg7180000005552 16887-20958
61 Oryzias latipes sub1 MemGly 73I9 ref 51 Oryzias latipes MemGly ctg7180000005460 32156-36221
Pundamilia nyererei MemGly AFNX01064659-1065346-conju
59
Oryzias latipes MemGly ctg7180000005401 18257-22318
61 97 Oryzias latipes MemGly ctg7180000005425 11562-15627
Oreochromis niloticus MemGly gi|1095462215|gb|MKQE01000211.1| 14278-17232
99
64
100 Oreochromis niloticus2 MemGly ref
97
62
Austrofundulus limnaeus MemGly LDAR01S000114.1
Oreochromis niloticus MemGly gi|1095462412|gb|MKQE01000014.1| 13825766-13829526
100
Kryptolebias marmoratus MemGly LHSH01024220-1031070-32739-35088-03049-conju
79
Oryzias latipes MemGly ctg7180000008441 26368-30456
66
Periophthalmus magnuspinnatus MemGly KN460998.1
Oryzias latipes MemGly ctg7180000008297 15102-18692
100
Oryzias latipes MemGly ctg7180000008297 15102-18692 100
Oryzias latipes MemGly ctg7180000005401 18257-22318
Amphilophus citrinellus MemGly CCOE01000729.1
64
Amphilophus citrinellus MemGly CCOE01000729.1
80
94
Oryzias latipes sub1 MemGly 73I9 ref
Austrofundulus limnaeus MemGly LDAR01S001611.1
Oryzias latipes MemGly ctg7180000005401 18257-22318
100
Oryzias latipes MemGly ctg7180000008207 2884299-2888366 Oryzias latipes MemGly ctg7180000008407 1-3590
Kryptolebias marmoratus MemGly LHSH01024220-1031070-32739-35088-03049-conju
Oryzias latipes sub1 MemGly 73I9 ref
Oryzias latipes MemGly ctg7180000005425 11562-15627
96
Oryzias latipes MemGly ctg7180000008506 23786-27855
100 93
92 Oryzias latipes MemGly ctg7180000005537 16580-20650
Austrofundulus limnaeus MemGly LDAR01S000114.1
Oryzias dancena MemGly 100 Oryzias latipes sub2 MemGly ref 100
Oryzias latipes MemGly ctg7180000005460 32156-36221
Oryzias latipes MemGly ctg7180000005552 16887-20958
52
Monopterus albus MemGly NW 018128364.1 100
Oryzias latipes MemGly ctg7180000008407 1-3590
66 Oryzias latipes MemGly ctg7180000005460 32156-36221 34 65
Periophthalmus magnuspinnatus MemGly KN460998.1
Salmo salar MemGly gb|AGKD04011231.1| 33196-35530 100 100 Salmo salar MemGly ref
Oryzias latipes MemGly ctg7180000008297 15102-18692
96 Oryzias latipes MemGly ctg7180000008506 23786-27855
58
Oncorhynchus kisutch MemGly NW 018089301.1
77
Oryzias latipes MemGly ctg7180000005537 16580-20650
Oryzias latipes MemGly ctg7180000005420 38270-41321
Oryzias latipes MemGly ctg7180000008407 1-3590
Oncorhynchus mykiss MemGly CM007962.1-2 Oncorhynchus mykiss MemGly CM007962.1-1
Oryzias latipes MemGly ctg7180000005425 11562-15627
27 Oryzias latipes MemGly ctg7180000005496 21953-26035 58
100
Oryzias latipes MemGly ctg7180000008441 26368-30456 Oryzias latipes MemGly ctg7180000007103 14526-18594
Oryzias latipes MemGly ctg7180000006849 23093-26792
100
93
Oryzias latipes MemGly ctg7180000005496 21953-26035
58
57 Oryzias latipes MemGly ctg7180000005517 18685-20985
Oncorhynchus kisutch MemGly NW 018089555.1
98
Oryzias latipes MemGly ctg7180000008635 1-3147
100 85
Oryzias latipes sub2 MemGly ref Oryzias latipes MemGly ctg7180000005420 27334-30668
98
Mola mola MemGly KV751367.1
Oryzias latipes sub2 MemGly ref
Oryzias latipes MemGly ctg7180000006849 23093-26792 92
Oryzias latipes MemGly ctg7180000008635 1-3147
Mola mola MemGly KV751382.1
100
53
Oryzias latipes MemGly ctg7180000005928 36629-39080
91
66 Oryzias latipes MemGly ctg7180000005928 36629-39080 94 Oryzias latipes MemGly ctg7180000005870 50247-53231 40
Morone saxatilis MemGly JTCL01025661.1
48
Oryzias latipes MemGly ctg7180000008207 2884299-2888366
100
Monopterus albus MemGly NW 018128364.1
100
94
Oryzias dancena MemGly 100
Cottus rhenanus MemGly LKTN01122206.1 Cottus rhenanus MemGly LKTN01000461-1038487-1043081-1048245-conju
Salmo salar MemGly gb|AGKD04233072.1| 2-1027
Oryzias latipes MemGly ctg7180000005870 50247-53231
100
Salmo salar MemGly ref
69
33 Larimichthys crocea MemGly gi|808865363|gb|KQ042289.1| 412114-415095 56 Larimichthys crocea MemGly gi|808886841|gb|KQ040886.1| 5200-9064
100
Monopterus albus MemGly NW 018128364.1
Oncorhynchus kisutch MemGly NW 018089301.1
Larimichthys crocea MemGly gi|808859437|gb|KQ042683.1| 17648-21598
36
Salmo salar MemGly ref
Salmo salar MemGly gb|AGKD04011231.1| 33196-35530 100
63
47
Oncorhynchus kisutch MemGly NW 018089301.1
Oncorhynchus mykiss MemGly CM007962.1-1
99
96 Larimichthys crocea MemGly gi|808886158|gb|KQ040940.1| 3034-6814 Larimichthys crocea MemGly gi|808859982|gb|KQ042671.1| 104590-108555
Cottus rhenanus MemGly LKTN01122206.1
Mola mola MemGly KV751382.1
86
61
Oncorhynchus mykiss MemGly CM007942.1
73
Mola mola MemGly KV751367.1
70
45
Mola mola MemGly KV751367.1
Cottus rhenanus MemGly LKTN01122206.1 100
70
97
Larimichthys crocea MemGly gi|808865363|gb|KQ042289.1| 438905-441268
Cottus rhenanus MemGly LKTN01000461-1038487-1043081-1048245-conju
99 100
Cottus rhenanus MemGly LKTN01000461-1038487-1043081-1048245-conju
100
70
Pampus argenteus MemGly JHEK01270501-1293299-conju 50 Larimichthys crocea MemGly ref
100
Larimichthys crocea MemGly gi|808859982|gb|KQ042671.1| 104590-108555 Esox lucius MemGly AZJR02000016.1
Esox lucius MemGly AZJR02000016.1 96
Esox lucius MemGly AZJR02000016.1 97
Larimichthys crocea MemGly gi|808865363|gb|KQ042289.1| 441409-443196
77 59
Morone saxatilis MemGly JTCL01025661.1
Monopterus albus MemGly NW 018127912.1
Larimichthys crocea MemGly ref
73 51
92 Larimichthys crocea MemGly gi|808886841|gb|KQ040886.1| 5200-9064 85 Larimichthys crocea MemGly gi|808865363|gb|KQ042289.1| 412114-415095
Austrofundulus limnaeus MemGly LDAR01S001611.1 Periophthalmus magnuspinnatus MemGly KN460998.1
38
Larimichthys crocea MemGly gi|808859437|gb|KQ042683.1| 17648-21598
47
Larimichthys crocea MemGly gi|808859437|gb|KQ042683.1| 17648-21598
73
Austrofundulus limnaeus MemGly LDAR01S000114.1
Amphilophus citrinellus MemGly CCOE01000729.1
Larimichthys crocea MemGly gi|808865363|gb|KQ042289.1| 412114-415095
80
Larimichthys crocea MemGly gi|808859982|gb|KQ042671.1| 104590-108555
65
100 16
Larimichthys crocea MemGly gi|808886841|gb|KQ040886.1| 5200-9064
100
Larimichthys crocea MemGly ref
99
90
Larimichthys crocea MemGly gi|808886158|gb|KQ040940.1| 3034-6814
100
Larimichthys crocea MemGly gi|808886158|gb|KQ040940.1| 3034-6814
99
Second half (2325-3882)
Oreochromis niloticus MemGly gi|1095461865|gb|MKQE01000561.1| 1787-5643 Oreochromis niloticus MemGly gi|1095462149|gb|MKQE01000277.1| 89781-93624
Oreochromis niloticus MemGly gi|1095460593|gb|MKQE01001833.1| 5132-8993 31 43 Oreochromis niloticus MemGly gi|1095461287|gb|MKQE01001139.1| 11672-15525
Oreochromis niloticus1 MemGly ref Oreochromis niloticus MemGly gi|1095462149|gb|MKQE01000277.1| 89781-93624 Oreochromis niloticus MemGly gi|1095461865|gb|MKQE01000561.1| 1787-5643
0.050
93 Oreochromis niloticus MemGly gi|1095461287|gb|MKQE01001139.1| 11672-15525 88 Oreochromis niloticus MemGly gi|1095462236|gb|MKQE01000190.1| 172928-175847
0.050
Sequences used for phylogenetic trees in Fig.1b and Fig. 4b
Sequences used for phylogenetic trees in Supplementary Fig.1 and 2
Figure S1 (continued)
Sequences same as those in Fig. 2
DNA packaging terminase Exon1 (424-1001)
Exon2 (1-554)
Periophthalmus magnuspinnatus term1 KN460998.1
39
Exon3 (7-806)
Periophthalmus magnuspinnatus term2 KN460998.1
51
Austrofundulus limnaeus term1 LDAR01S000114.1
Amphilophus citrinellus term2 CCOE01000729.1
Austrofundulus limnaeus term1 LDAR01S000580.1
99
99
Mola mola term1 KV751330.1
27
Pampus argenteus term1 JHEK01269971.1
88
46
6
Larimichthys crocea term1 gi|808886158|gb|KQ040940.1| 39010-39894
8
Larimichthys crocea term1 gi|808879058|gb|KQ041413.1| 14236-15120
Salmo salar term2 gb|AGKD04057469.1| 399-953
Salmo salar term1 ref
24 Salmo salar term2 ref Salmo salar term2 gb|AGKD04054218.1| 1069-1623
Salmo salar term1 gb|AGKD04041198.1| 3018-3902
23
Monopterus albus term2 NW 018128364.1
Salmo salar term1 gb|AGKD04028532.1| 3080-3871
Oryzias dancena term2
Salmo salar term1 gb|AGKD04010875.1| 1796-2527
83 99
96
Monopterus albus term1 NW 018128490.1 Oryzias dancena term1 90 99 99
Oryzias latipes term1 ctg7180000008207 2959270-2960352
64
89
19 10 97
1 25
99
31 99
Oryzias latipes term1 ctg7180000008441 59417-60533 45 37
Oryzias latipes term1 ctg7180000008409 20761-21857
79
Oryzias latipes term1 ctg7180000005565 5241-6365
24
55
26
Oryzias latipes term1 subtype1 ref Oryzias latipes term1 ctg7180000005515 11736-12860
24
Oryzias latipes term1 ctg7180000005545 32138-33261
99
Nothobranchius furzeri term1 LN600700.1e
Oreochromis niloticus term1 subtype2 ref
Neolamprologus brichardi term1 JH422644.1 Haplochromis burtoni term1 JH426215.1
35
Oreochromis niloticus term1 gi|1095461785|gb|MKQE01000641.1| 3081-3986
40
Oreochromis niloticus term1 gi|1095461328|gb|MKQE01001098.1| 21243-22125
81
13
Oreochromis niloticus term1 gi|1095462411|gb|MKQE01000015.1| 40264029-40264934
99 63
Oryzias latipes term2 ctg7180000007081 26974-27528 Oryzias latipes term2 ctg7180000004835 30683-31237
49
Oryzias latipes term2 ctg7180000005520 11938-12480
31
Oreochromis niloticus term1 gi|1095461313|gb|MKQE01001113.1| 23012-23848
22
Oreochromis niloticus term1 gi|1095462170|gb|MKQE01000256.1| 39572-40477
41 72
Oreochromis niloticus term1 gi|1095462344|gb|MKQE01000082.1| 352048-352953
Oreochromis niloticus term2 gi|1095461633|gb|MKQE01000793.1| 16129-16680
53 83
Oreochromis niloticus term1 gi|1095462087|gb|MKQE01000339.1| 23320-24225 Oreochromis niloticus term1 gi|1095461766|gb|MKQE01000660.1| 12873-13778
Oryzias latipes term3 ctg7180000005561 2047-2878
Oryzias latipes term3 ctg7180000008302 21863-22696 Oryzias latipes term3 ctg7180000007081 25097-25930
Oryzias latipes term3 ctg7180000004835 32282-33115 Oryzias latipes term3 ctg7180000005515 15724-16556 Oryzias latipes term3 ctg7180000004710 40292-41124 Oryzias latipes term3 ctg7180000008297 33752-34583 Oryzias latipes term3 ctg7180000008443 2196-3029 Kryptolebias marmoratus term3 LHSH01015698.1
97
Austrofundulus limnaeus term3 LDAR01S000580.1 99
Austrofundulus limnaeus term3 LDAR01S000114.1
Nothobranchius furzeri term3 LN600656.1j
99
Nothobranchius furzeri term3 LN603525.1 99
Maylandia zebra term2 ABPM01010268.1
Oreochromis niloticus term2 gi|1095460128|gb|MKQE01002298.1| 4351-4905
Oryzias latipes term3 ctg7180000008442 17576-18409
Oryzias latipes term3 ctg7180000005520 10063-10896
Melanochromis auratus term2 ABPL01047587.1 Labeotropheus fuelleborni term2 ABPK01064941.1
Oryzias latipes term3 ctg7180000004811 37908-38741
Oryzias latipes term3 ctg7180000005545 36125-36958 55
Nothobranchius furzeri term2 LN602350.1
Oreochromis niloticus term2 gi|1095462411|gb|MKQE01000015.1| 40296432-40296986
Oryzias latipes term3 ctg7180000008409 24721-25553
Oryzias latipes term3 subtype1 73I9 ref
Haplochromis burtoni term2 JH427471.1
14 47
Oryzias latipes term3 ctg7180000008407 38944-39776
Oryzias latipes term3 ctg7180000005540 3412-4244
Nothobranchius furzeri term3 LN602350.1
Pundamilia nyererei term3 AFNX01061838.1
79
Oreochromis niloticus term3 subtype2 ref
99
Oreochromis niloticus term3 gi|1095462215|gb|MKQE01000211.1| 70295-71116
87
Melanochromis auratus term3 ABPL01023748.1
54
Haplochromis burtoni term3 JH427471.1
10
Oreochromis niloticus term2 subtype1 ref
Maylandia zebra term3 ABPM01010268.1
99
Oreochromis niloticus term2 gi|1095462149|gb|MKQE01000277.1| 5300-5854 Oreochromis niloticus term2 gi|1095461888|gb|MKQE01000538.1| 19340-19849
Neolamprologus brichardi term3 JH422644.1
22 66
Oreochromis niloticus term1 subtype1 ref 83
70 48
Oryzias latipes term2 ctg7180000008297 35627-36181
Oreochromis niloticus term2 gi|1095462170|gb|MKQE01000256.1| 67985-68539
93
Oreochromis niloticus term1 gi|1095462149|gb|MKQE01000277.1| 49549-50454 71 8676
Oryzias latipes term2 ctg7180000005515 17601-18155
Oreochromis niloticus term2 gi|1095462344|gb|MKQE01000082.1| 379825-380379
11
42 66
88
Oryzias latipes term2 ctg7180000008302 23741-24295
Oreochromis niloticus term2 gi|1095460817|gb|MKQE01001609.1| 9610-10164
25
Melanochromis auratus term1 ABPL01010904-EQ194968 56
Oryzias latipes term3 ctg7180000005116 58-876 Oryzias latipes term3 ctg7180000005565 9230-10061
Oryzias latipes term2 ctg7180000005540 1818-2370
Neolamprologus brichardi term2 JH422644.1
53 43 22
Neolamprologus brichardi term1 AFNY01116149.1 99 94
99
Melanochromis auratus term2 EQ187425.1
15 99
Pundamilia nyererei term1 AFNX01061890.1 83
Oryzias dancena term3 Oryzias latipes term3 subtype2 ref Oryzias latipes term3 ctg7180000008207 2963738-2964571
Oryzias latipes term2 ctg7180000005565 11103-11657
Neolamprologus brichardi term2 JH422345.1 98
Oreochromis niloticus term1 gi|1095461974|gb|MKQE01000452.1| 18905-19786 57
Monopterus albus term3 NW 018128364.1 99
Pundamilia nyererei term2 AFNX01061838.1
73
Nothobranchius furzeri term1 LN600656.1g 84
Salmo salar term3 gb|AGKD04020781.1| 10420-11238
99
Nothobranchius furzeri term2 LN603525.1
Oryzias latipes term1 ctg7180000004710 43988-45111
99
Salmo salar term3 gb|AGKD04011231.1| 47243-48061
Nothobranchius furzeri term2 LN600656.1i
99
Oryzias latipes term1 ctg7180000008442 13588-14711
99
Salmo salar term3 gb|AGKD04026190.1| 6-824
Oryzias latipes term2 ctg7180000008443 4075-4628
Oryzias latipes term1 ctg7180000008302 17875-18999
Nothobranchius furzeri term1 LN600700.1b
Salmo salar term3 gb|AGKD04038697.1| 257-1075
18 Oryzias latipes term2 ctg7180000004710 38693-39247 Oryzias latipes term2 ctg7180000005116 1922-2477
Oryzias latipes term1 ctg7180000008297 30688-31812
99
Salmo salar term3 gb|AGKD04011408.1| 31551-32078 Salmo salar term3 gb|AGKD04039526.1| 3231-4049
36 82
Oryzias latipes term2 ctg7180000008207 2965664-2966218
Oryzias latipes term2 ctg7180000005561 447-999
Oryzias latipes term1 ctg7180000004811 41604-42727 Oryzias latipes term1 ctg7180000005561 5743-6867 Oryzias latipes term1 ctg7180000008407 34984-36079
Salmo salar term3 gb|AGKD04023447.1| 3231-4049
Oryzias latipes term2 ctg7180000004811 36312-36866 Oryzias latipes term2 ctg7180000008442 19453-20007
Oryzias latipes term1 ctg7180000005520 6079-7201 19
Oryzias latipes term2 subtype2 ref
Oryzias latipes term2 ctg7180000008409 26600-27154
Oryzias latipes term1 ctg7180000005540 7105-8228
Salmo salar term3 gb|AGKD04022350.1| 7414-8232
16
Salmo salar term3 gb|AGKD04036141.1| 3815-4633
Oryzias latipes term2 ctg7180000008407 40825-41379
Oryzias latipes term1 ctg7180000008301 30361-31056 32
28
Oryzias latipes term2 ctg7180000006188 26111-26659
99
Oryzias latipes term1 subtype2 ref Oryzias latipes term1 ctg7180000008434 11-945
93
19
Salmo salar term2 gb|AGKD04018029.1| 1419-1973
Salmo salar term1 gb|AGKD04031826.1| 2817-3596
Salmo salar term3 gb|AGKD04010875.1| 9114-9866 Salmo salar term3 ref Salmo salar term3 gb|AGKD04054218.1| 2543-2968 Salmo salar term3 gb|AGKD04057469.1| 1873-2604
Salmo salar term2 gb|AGKD04010875.1| 10786-11340
Salmo salar term1 gb|AGKD04037367.1| 3434-4318
92
23 27
Salmo salar term2 gb|AGKD04023447.1| 4969-5523
Salmo salar term1 gb|AGKD04037406.1| 2817-3701
Salmo salar term3 gb|AGKD04018029.1| 2-499 8363 23
Salmo salar term2 gb|AGKD04022350.1| 9152-9706
Salmo salar term1 gb|AGKD04036618.1| 864-1748
Salmo salar term3 gb|AGKD04094390.1| 864-1565 99
63
Salmo salar term2 gb|AGKD04011408.1| 33286-33840
45 95
Salmo salar term1 gb|AGKD04036303.1| 148-1032
Oncorhynchus kisutch term3 NW 018089301.1
99
Salmo salar term2 gb|AGKD04016021.1| 16922-17476 44
Esox lucius term3 AZJR02000033.1 Esox lucius term3 AZJR02000143.1 Oncorhynchus mykiss term3 CM007948.1-2
Salmo salar term2 gb|AGKD04241974.1| 29-370 41
Salmo salar term1 gb|AGKD04026190.1| 6706-7590
62
99 56
42
Salmo salar term2 gb|AGKD04011408.1| 36218-36772 81
43
Salmo salar term1 gb|AGKD04022350.1| 464-1348
Esox lucius term3 AZJR02000337.1
71
Oncorhynchus kisutch term2 NW 018089301.1
63
Salmo salar term1 gb|AGKD04020781.1| 3654-4538 99
Cottus rhenanus term3 LKTN01080901.1 Esox lucius term3 AZJR02001341.1
99
Oncorhynchus mykiss term2 CM007948.1
Salmo salar term1 gb|AGKD04011231.1| 40477-41361 99
Larimichthys crocea term3 gi|808859982|gb|KQ042671.1| 146270-147091 Larimichthys crocea term3 gi|808879058|gb|KQ041413.1| 20261-21082 Notothenia coriiceps term3 AZAD01039627.1
Esox lucius term2 CM002826.2
99
Larimichthys crocea term3 gi|808886841|gb|KQ040886.1| 57826-58647
Cottus rhenanus term3 LKTN01026529.1
37
Esox lucius term2 AZJR02000033.1
96
Salmo salar term1 gb|AGKD04025673.1| 4309-5181
Larimichthys crocea term3 gi|808886158|gb|KQ040940.1| 44721-45542
99
Maccullochella peelii term2 LKNJ01006250.1
43
Oncorhynchus kisutch term1 NW 018089301.1
90
92
Cottus rhenanus term2 LKTN01046056.1
33
Oncorhynchus mykiss term1 CM007948.1 99
48
Larimichthys crocea term2 gi|808863060|gb|KQ042470.1| 168205-168714
63
Esox lucius term1 AZJR02000462.1 63
45
Monopterus albus term2 NW 018128371.1 53
Larimichthys crocea term3 gi|808883733|gb|KQ041069.1| 18245-19066
64 29
Larimichthys crocea term2 gi|808879058|gb|KQ041413.1| 21986-22540
45
Larimichthys crocea term1 gi|808857396|gb|KQ042839.1| 14296-15180
7
Larimichthys crocea term3 gi|808857396|gb|KQ042839.1| 19999-20820 99
Larimichthys crocea term2 gi|808886158|gb|KQ040940.1| 46456-47010
5 19
Larimichthys crocea term1 gi|808886841|gb|KQ040886.1| 52126-53010
12
92
Larimichthys crocea term2 gi|808857396|gb|KQ042839.1| 21728-22282
15
Larimichthys crocea term1 gi|808868082|gb|KQ042173.1| 2901-3620
Pampus argenteus term3 JHEK01296196.1 Larimichthys crocea term3 ref
88
30
Larimichthys crocea term2 ref
26
Larimichthys crocea term1 ref
48 99
99
Larimichthys crocea term2 gi|808886841|gb|KQ040886.1| 59571-60125
35 99
Larimichthys crocea term1 gi|808859982|gb|KQ042671.1| 140440-141324
99
Larimichthys crocea term2 gi|808859982|gb|KQ042671.1| 148052-148558 90
Pampus argenteus term1 JHEK01285410.1 25
Cynoglossus semilaevis term3 CM002393.1i
Larimichthys crocea term2 gi|808883733|gb|KQ041069.1| 20197-20538 95
Cottus rhenanus term1 LKTN01052069.1 28
Boleophthalmus pectinirostris term3 KN522026.1 Monopterus albus term3 NW 018128371.1
Pampus argenteus term2 JHEK01296196.1
Monopterus albus term1 NW 018128371.1
85
Scartelaos histophorus term3 KN502454.1
99 44
Boleophthalmus pectinirostris term2 KN522026.1
Notothenia coriiceps term1 AZAD01039627.1
48
Periophthalmus magnuspinnatus term3 KN460998.1
Austrofundulus limnaeus term2 LDAR01S000114.1
Kryptolebias marmoratus term1 LHSH01025732.1 94
Amphilophus citrinellus term3 CCOE01000729.1
Kryptolebias marmoratus term2 LHSH01015698.1
95
Amphilophus citrinellus term1 CCOE01000729.1 32
Oreochromis niloticus term3 gi|1095462344|gb|MKQE01000082.1| 378136-378957 Oreochromis niloticus term3 gi|1095460817|gb|MKQE01001609.1| 11032-11853
79
0.050
2354
Oreochromis niloticus term3 gi|1095461633|gb|MKQE01000793.1| 14511-15248 Oreochromis niloticus term3 gi|1095460128|gb|MKQE01002298.1| 2733-3365
Oreochromis niloticus term1 gi|1095461968|gb|MKQE01000458.1| 37616-38521 84 74
0.050
70 36
Oreochromis niloticus term3 subtype1 ref Oreochromis niloticus term3 gi|1095462149|gb|MKQE01000277.1| 6737-7558 Oreochromis niloticus term3 gi|1095462411|gb|MKQE01000015.1| 40294728-40295549 Oreochromis niloticus term3 gi|1095461888|gb|MKQE01000538.1| 20868-21551
0.050
Sequences used for phylogenetic trees in Fig.1b and Fig. 4b
Sequences used for phylogenetic trees in Supplementary Fig.1 and 2
Figure S1 (continued)
Sequences same as those in Fig. 2
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