FijiWings: an open source toolkit for semi-automated morphometric ...

Recommend Documents

FijiWings: An Open Source Toolkit for ... - Semantic Scholar

Jun 19, 2013 - Alexander C. Dobens and Leonard L. Dobens1 ... The Drosophila wing has landmark features, such as the ..... misexpressing Trbl (D) wings is noticeably lighter than WT (E) and Pten RNAi (F) is noticeably darker, consistent ...

LIUM SPKDIARIZATION: AN OPEN SOURCE TOOLKIT FOR ...

This paper presents an open-source diarization toolkit which is mostly dedicated to ... segmenting and clustering tools and a Viterbi decoder. Mistral Seg,.

An Open-Source Toolkit for Mining Wikipedia

2 Wikipedia's entire content is released every month or so as html and xml ... The anchor texts of the links made to an article provide a source of synonyms and ...

An Open-source Neural Sequence Labeling Toolkit

recognition with iterated dilated convolutions. In. EMNLP. pages 2670â2680. Erik F Tjong Kim Sang and Sabine Buchholz. 2000. Introduction to the conll-2000 ...

The Connectome Viewer Toolkit: an open source

Jun 6, 2011 - Through the open design of the Connectome Viewer, we encourage the use of the many libraries available in the scientific Python com- munity.

Towards an Open Source Toolkit for Building Record Linkage Workflows

combine the selected techniques for building a record linkage workflow of a given application. .... up with the best solution for record linkage, and therefore an experimental ..... easiest matches, by means of the more straightforward com- putationa

Familia: An Open-Source Toolkit for Industrial Topic Modeling

Jul 31, 2017 - ... categories: semantic representation and semantic matching. For. 1https://github.com/baidu/Familia. arXiv:1707.09823v1 [cs.IR] 31 Jul 2017 ...

CUED-RNNLM -- An Open-Source Toolkit for Efficient Training and ...

CUED-RNNLM â AN OPEN-SOURCE TOOLKIT FOR EFFICIENT TRAINING. AND EVALUATION OF ... level output targets is supported, in contrast to existing tools which ... Due to the good performance and efficient imple- mentation of ..... The test set perplexity

Demonstration of Joshua: an open source toolkit for parsing-based

Demonstration of Joshua: An Open Source Toolkit for Parsing-based Machine Translationâ. Zhifei Li, Chris Callison-Burch, Chris Dyerâ , Juri Ganitkevitch+, ...

An Open Source Toolkit for Quantitative Historical Linguistics

Aug 9, 2013 - An Open Source Toolkit for Quantitative Historical Linguistics. Johann-Mattis List ... 2000; ProkiÄ et al., 2009), statistical tests for ge- nealogical .... 1249 file (tool) bÃ¬mbÃº. Tommo_So .... 3 Evaluation. In order to improve the

An open-source LabVIEW application toolkit for phasic ... - Springer Link

ety of tools for off-line extraction and analysis of heart rate data. Current methods and issues con- cerning heart rate analysis are highlighted, and how the toolkit ...

Creative computing with Landlab: an open-source toolkit for building ...

Sep 14, 2016 - Landlab is licensed under the MIT free software license, an approved ... which the master repository is presently hosted on the GitHub website,.

Pyradi: an open-source toolkit for infrared calculation and ... - CiteSeerX

Toolkits are often written in scriptable languages, such as Python and Matlab. ... Programmer time is expensive; conserve it in preference to machine time.

An open source software toolkit for image-guided ...

A freely available software platform can help researchers rapidly and ... der bar at top right is an optical tracking system monitoring the posi- tion of the patient and ... toolkit is available for free download, and details of the ongoing project c

IRSTLM: an Open Source Toolkit for Handling Large Scale - FBK

present an open source toolkit that permits to efficiently han- dle language ... from the Web [1, 2], has increased among the research com- munity the .... rectly compare (i.e. to test for < or >) as many as possible .... permits to load into memory

FRETBursts: An Open Source Toolkit for Analysis of Freely ... - PLOS

Aug 17, 2016 - cation of smFRET, no complete software package for smFRET burst analysis ... we introduce FRETBursts, an open source software for analysis.

Demonstration of Joshua: An Open Source Toolkit for Parsing-based ...

also implements suffix-array grammar extraction and minimum error rate training. It uses parallel and distributed computing techniques for scalability. We also ...

An Open Source Toolkit for Identifying Comparative ... - Springer Link

software (open source) movement is that because source code is fundamental to the .... call for a unified framework of time geography (Sui,. 2012), and also a toolkit ..... Santa Barbara: National Center for Geographic. Information and Analysis ...

FRETBursts: An Open Source Toolkit for Analysis of Freely-Diffusing ...

e signature of. those two processes can be observed in ...... doc.org) and all the API documents are automatically gen-. erated from docstrings. On each commit ...

An Open Source Toolkit for GPS Processing, Total Electron ... - GPSTk

choose whether to modify and redistribute the source with any application .... A receiver autonomous integrity monitoring (RAIM) algorithm is also included [12].

NILMTK: An Open Source Toolkit for Non-intrusive Load Monitoring

Apr 15, 2014 - Monitoring Toolkit (NILMTK); an open source toolkit de- ..... The range of different application areas of energy disaggre- gation has prompted a ...

Towards an Open Source Toolkit for Ubiquitous ... - Semantic Scholar

provides a good compromise between security, scalability, and privacy. A user can .... ported on laptop/desktop systems and less commonly on PDAs and mobile .... on native libraries) run and are tested on an Asus MyPAL. PocketPC with an ...

Experiences with Place Lab: An Open Source Toolkit for ... - Microsoft

stage mediator-observer design pattern [19] to create the stages of processing. ...... The redevelopment of the C# version of Place Lab for smart- phones allowed ...

An Open Source ECG Toolkit with DICOM - Computers in Cardiology

various medical image modalities, the storage and ... applications for conversion of ECGs, storage on a .... from: http://www.xs4all.nl/~ingenium/dicom.html. 443 ...

FijiWings: an open source toolkit for semi-automated morphometric ...

Download PDF

17 downloads 0 Views 709KB Size Report

Comment

Division of Molecular Biology and Biochemistry. School of Biological Sciences. University of Missouri-Kansas City. Kansas City, MO 64110. *Corresponding ...

FijiWings: an open source toolkit for semi‐automated morphometric analysis of insect wings Alexander C. Dobens and Leonard L. Dobens* Division of Molecular Biology and Biochemistry School of Biological Sciences University of Missouri‐Kansas City Kansas City, MO 64110 *Corresponding author: Dr. Leonard L. Dobens, Jr. Division of Molecular Biology and Biochemistry School of Biological Sciences University of Missouri‐Kansas City Kansas City, MO 64110 Tel: 816‐523‐3778 Fax: 816‐523‐5995 Email: [email protected] DOI: 10.1534/g3.113.006676

Figure S1 Fraction of trichomes detected by FijiWings. 75px trichome counting tool was used to select five intervein areas (columns) from three different micrographs (rows: YAS‐Trbl, UAS‐Yello and UAS‐PtenRNAi) and trichome counds were recorded (FijiWings detected). Manual inspection of these identified trichomes not detected by automated counting and these were marked (white arrows) and recorded (Manually detected). Fraction detected (as %) = 100 x FijiWings detected/ (FijiWings detected + Manually detected).

2 SI

A. C. Dobens and L. L. Dobens