Supplementary Table S2. List of samples analysed Fibropapillomatosis tumoured and non-tumoured green turtles (Chelonia mydas) from three confirmed ...
Supplementary Table S2. List of samples analysed Fibropapillomatosis tumoured and non-tumoured green turtles (Chelonia mydas) from three confirmed infected populations. Moreover, non-tumoured
Health Status
r ou
C
lin ic a
lly
he a
lth y
no ntu m
ou re
d
FP
FP
m tu
sample ID
Cm-HaFP-11neck Cm-HaFP-14RHF Cm-HaFP-2LHF Cm-HaFP-3LHF Cm-HaFP-4neck Cm-HaFP-8maxilla Cm-PiFP-04 Cm-PiFP-20 Cm-PiFP-80 Cm-PiFP-82 Cm-TCFP-14 Cm-TCFP-2 Cm-TCFP-3 Cm-TCFP-5 Cm-TCFP-8 Cm-HaT-8 Cm-HaT-11 Cm-HaT-14 Cm-HaT-2 Cm-HaT-3 Cm-HaT-4 Cm-PiT-04 Cm-PiT-20 Cm-PiT-51 Cm-PiT-80 Cm-PiT-82 Cc-CyT-275 Cc-CyT-346 Cc-DkT-01 Cc-DkT-02 Cm-DkT-01liver Cm-DkT-01mouth Cm-DkT-01neck Cm-DkT-01rearLF Cm-ToT-37 Dc-GhT-22 Dc-GhT-23 Ei-KuT-kw5 Ei-KuT-kw7 Ei-PiT-25 Ei-PiT-46 Ei-PiT-71 Ei-PiT-85
samples from four more turtle species are also included for the quality-checking and analysis of qPCR Ct values Species population (sample origin) Ct turtle Ct virus gene Delta (∆) Ct =
Chelonia mydas (green) Chelonia mydas (green) Chelonia mydas (green) Chelonia mydas (green) Chelonia mydas (green) Chelonia mydas (green) Chelonia mydas (green) Chelonia mydas (green) Chelonia mydas (green) Chelonia mydas (green) Chelonia mydas (green) Chelonia mydas (green) Chelonia mydas (green) Chelonia mydas (green) Chelonia mydas (green) Chelonia mydas (green) Chelonia mydas (green) Chelonia mydas (green) Chelonia mydas (green) Chelonia mydas (green) Chelonia mydas (green) Chelonia mydas (green) Chelonia mydas (green) Chelonia mydas (green) Chelonia mydas (green) Chelonia mydas (green) Caretta caretta (loggerhead) Caretta caretta (loggerhead) Caretta caretta (loggerhead) Caretta caretta (loggerhead) Chelonia mydas (green) Chelonia mydas (green) Chelonia mydas (green) Chelonia mydas (green) Chelonia mydas (green) Dermochelys coriacea (leatherback) Dermochelys coriacea (leatherback) Eretmochelys imbricata (hawksbill) Eretmochelys imbricata (hawksbill) Eretmochelys imbricata (hawksbill) Eretmochelys imbricata (hawksbill) Eretmochelys imbricata (hawksbill) Eretmochelys imbricata (hawksbill)
Hawaii, USA, Northern Pacific Hawaii, USA, Northern Pacific Hawaii, USA, Northern Pacific Hawaii, USA, Northern Pacific Hawaii, USA, Northern Pacific Hawaii, USA, Northern Pacific Principe Island, Western Africa Principe Island, Western Africa Principe Island, Western Africa Principe Island, Western Africa Turks & Caicos Islands, Caribbean Sea Turks & Caicos Islands, Caribbean Sea Turks & Caicos Islands, Caribbean Sea Turks & Caicos Islands, Caribbean Sea Turks & Caicos Islands, Caribbean Sea Hawaii, USA, Northern Pacific Hawaii, USA, Northern Pacific Hawaii, USA, Northern Pacific Hawaii, USA, Northern Pacific Hawaii, USA, Northern Pacific Hawaii, USA, Northern Pacific Principe Island, Western Africa Principe Island, Western Africa Principe Island, Western Africa Principe Island, Western Africa Principe Island, Western Africa Northen Cyprus, Mediterranean Northen Cyprus, Mediterranean Denmark, Danmarks Aquarium (not naturally) Denmark, Danmarks Aquarium (not naturally) Denmark, Danmarks Aquarium (not naturally) Denmark, Danmarks Aquarium (not naturally) Denmark, Danmarks Aquarium (not naturally) Denmark, Danmarks Aquarium (not naturally) Costa Rica, Tortuguero, Caribbean coast Ghana, Western Africa Ghana, Western Africa Qaru Island, Kuwait, Persian Gulf Qaru Island, Kuwait, Persian Gulf Principe Island, Western Africa Principe Island, Western Africa Principe Island, Western Africa Principe Island, Western Africa
nuclear DNA 23,06 20,93 24,12 24,12 23,89 20,45 16,9 25,95 20,01 24,1 20,8 22,63 22,57 21,18 27,75 21,73 20,04 20,36 25,16 23,83 26,54 21,71 21,04 21,53
20,64 20,03 23,51 23,06 23,32 23,53 17,18 18,53
20,34 22,48 24,85 21,89 22,63 20,1 21,29 23,84 23,68 22,49 24,21
UL27 22,7 18,25 17,14 20,93 20,98 16,81 18,51 20,71 16,79 24,96 18,88 20,62 21,8 21,15 26,14 24,01 26,8 28,96 31,39 30,82 31,13 27,63 27,26 29,2 26,75 29,54 23,18 26,84 23,43 22,58 29,83
29,41 26,93 26,25 25,08 28,02 21,95 27,12 26,3 23,02 22,89 22,11 23,29
virus UL27 - nu DNA -0,36 -2,68 -6,98 -3,19 -2,91 -3,64 1,61 -5,24 -3,22 0,86 -1,92 -2,01 -0,77 -0,03 -1,61 2,28 6,76 8,6 6,23 6,99 4,59 5,92 6,22 7,67 6,11 9,51 -0,33 3,78 0,11 -0,95 12,65 10,88 6,59 3,77 0,23 6,13 -0,68 7,02 5,01 -0,82 -0,79 -0,38 -0,92
nuDNA copy number 2,63E+03 2,34E+04 2,13E+03 9,25E+02 1,07E+03 2,24E+04 9,49E+04 6,59E+02 1,29E+04 9,37E+02 8,24E+03 2,75E+03 1,14E+03 2,79E+03 2,10E+01 1,03E+04 3,90E+03 1,03E+04 1,09E+03 1,11E+03 1,96E+02 4,34E+03 1,54E+04 1,12E+04 7,91E+03 1,28E+04 1,57E+03 2,09E+03 1,77E+03 1,77E+03 1,83E+05 3,34E+04 1,20E+04 3,03E+03 6,63E+02 4,43E+03 2,75E+03 1,39E+04 6,50E+03 1,27E+03 1,40E+03 3,01E+03 1,00E+03
CFPHV copy number 4,14E+02 1,55E+05 1,19E+05 1,05E+04 1,01E+04 2,14E+05 4,93E+04 1,76E+04 1,49E+05 5,40E+03 5,68E+04 8,73E+04 4,10E+04 6,21E+04 4,00E+00 7,22E+01 4,16E+02 6,06E+01 4,00E-05 1,84E+01 1,51E+01 1,42E+02 0,00E+00 4,18E-04 0,00E+00 4,18E+01 1,69E+04 1,16E+02 1,44E+04 2,48E+04 2,79E-04 4,54E+01 6,57E+01 3,79E+02 5,00E+03 9,54E+01 3,72E+04 1,92E+02 2,30E+02 1,87E+04 2,04E+04 3,36E+04 1,58E+04
