Identification of ovarian cancer associated genes using an integrated ...
Recommend Documents
Feb 6, 2013 - biological pathways [3] and the network of protein inter- ... acterisation of susceptible genes associated with cancer ...... 2010, 72:25â45. 15.
expression profiles of NAC1-overexpressing SKOV3 ovarian cancer cells and NAC1-knockdown SKOV3 .... Primary cultures of mouse ovarian surface epithelial (OSE) ..... Chang KJ, Juan LJ, Lee WH: Breast cancer cells induce stromal fi-.
Nov 7, 2018 - For instant, AGER was associated .... 92 (52.0) p. 0.037. 0.003. 0.009. 0.036. 0.022. 0.008. Note . p: chiâsquare test. ..... Molecular Immunology,.
Aug 2, 2012 - nosed and 15,460 women will die of ovarian cancer in ..... Table 1 List of identified glycosylation sites and the results of quantitation of ...
Gene Ontology (GO) enrichment analysis and pathway analysis were performed ..... SELP. 48. COL1A1. 98. ALDH1L2. 148. CHD9. 198. ADH7. 49. CYP1B1. 99.
Here we review a number of recent studies showing that HOX genes are strongly expressed in ovarian cancer, and that in some cases the expression of specific ...
Sep 9, 2011 - In microarray analysis of ovarian tissues, HOXA5 and HOXA9 were both shown to be overexpressed [32]. HOXA5 has been found to act as a.
Supplementary Table S1: Linker genes in the subnetworks obtained from different methods. Steiner. Kwalk(not-weighted). Kwalk(edge-weighted). HIST1H4C.
with de novo assembly for the identification of chimeric transcripts in cancer ...... of Excellence funding program (RKT, RB, and JW); and by Stand Up To Cancer.
Jun 20, 2016 - logical samples, making it the largest systematically annotated gene ..... for illustration purposes, the top 100 for which the effect of the disease.
improve the performance of traditional Floyd warshall algorithm, an iterative ... Keywords: Dijkstra's algorithm, Enhanced Floyd warshall algorithm, Protein to ...
Jan 10, 2008 - oped a new approach which inputs nondiscretized ... multiexperiment analysis to identify recurrent CNAs within a group of ..... genes in the various lists to cancer using the Genetic ... Black dotted .... The significance threshold for
Sep 29, 2015 - genes mediating these cancers, through an extensive compara- ..... cluster validity index from a group of such indices. List of results of enriched ...
The metastatic spread of breast cancer accounts for most of its morbidity and mortality; therefore, identifying the genes and gene products involved in breast ...
Jun 7, 2009 - Richard Macknight; Email: richard.macknight@ otago.ac.nz. Addendum to: Day RC, ..... DW, Dawson SC, Endow SA, et al. A standardized.
with Michael Lambert and James Garrels (Cold Spring. Harbor Laboratory). ..... Pachnis, V., Brannan, C. I., and Tilghman, S. M. The structure and expression of a ...
Jul 9, 2010 - associated with tapping panel dryness from Hevea ... Background: Tapping panel dryness (TPD) is one of the most serious threats to natural ...
Huang X, Han B (2010) Function annotation of the rice transcriptome at ... Song Aiping, Zhu Xirong, Chen Fadi, Gao Haishun, Jiang Jiafu, Chen. Sumei (2014) A ...
Avenida Pista Principal esq Pista Secundaria, S/N, 30798 Tapachula, CHIS, Mexico. 6Centro de Investigacion y Desarrollo en Ciencias de la Salud, ...
15 Mar 2013 - Pioneer 335) were sampled 17, 22, 25, and 28 days after pollination, during the linear phase of grain filling, ... 'storeroom' for accumulation of photosynthate [9,10]. The cell ... storage (14 DAP), and maximum starch accumulation rate
values of the identified DEGs were input into the VennPlex software (version 1.0.02; irp.nia.nih.gov/bioinformatics/vennâ plex.html) (22) to compare the DEGs in ...
Universidad Autonoma de Zacatecas, Carretera Zacatecas-Guadalajara Km 6, 98160 Ejido la .... PCR System (Applied Biosystems, Foster City, CA) in a total.
Dec 3, 2014 - chlorophyll biosynthesis were expressed at similar levels in .... (italicized) encode the following enzymes: (1) glutamyl-tRNA ... protoporphyrin IX monomethylester cyclase; (12) protochlorophyllide oxidoreductase; (13) divinyl ... flow
Identification of ovarian cancer associated genes using an integrated ...
CDC7; CHEK1; IGFBP7. 4.38. 0.000724521 0.00937227. 2. Escape growth suppressor. i.e. Insensitivity to growth inhibitor regulation of cell proliferation.
Identification of ovarian cancer associated genes using an integrated approach in a Boolean framework by Gaurav Kumar, Edmond J. Breen and Shoba Ranganathan Additional File 8: GATHER [71] GO biological process annotations of the differentially expressed genes associated with the cancer hallmarks
in Table 3.
Genes are annotated with GO terms using the GATHER enrichment method. B-factor (i.e. Bayes factor) quantifies the amount of evidence supporting the hypothesis that the annotation is associated with our genes. p-values and q-values are based on Fisher's exact test. Cancer Hallmark
GO Term Definition
GO Term-ID (GO-depth)
Genes
negative regulation of cell proliferation
GO:0008285 (6)
CDC7; CHEK1; IGFBP7
regulation of cell proliferation
GO:0042127 (5)
3. Active invasion and negative regulation of metastasis programmed cell death 4. Limitless replicative cell proliferation potential / Enable replicative immortality 5. Induces angiogenesis tissue regeneration 6. Resisting cell death anti-apoptosis 7. Genomic instability DNA damage checkpoint
GO:0043069 (6)
8. Deregulate cellular energetics
1. Sustain growth signal 2. Escape growth suppressor i.e. Insensitivity to growth inhibitor