in eukaryotic 18S rRNA gene

       

 

name

sequence

Matches (%) in Standard eukaryotic direction position 18S (E.coli) rRNA gene*

105195-98 1069 AATCAGTTATAGTTTATTTGRTGGTACC  F 120-143 97 8 18R1 1058R 95-98 9 18SU1310R CTCCACCAACTAAGAACGGC  1077 1515TGATCCTTCYGCAGGTTCAC  R > 90 10 EUK329 1534 ATTGGAGGGCAAGTCTGGT  F 499-516 95-97 11 18S C ACCTGGTTGATCCTGCCAG†  F 7-25 > 98 12 U18SF * represented as percent of eukaryotic sequences from SSURef 111 SILVA NR (31862 sequences).

1

Primer properties 

 

18S D

ACTAAGAACGGCCATGCAC 

R

p73 & p47 (296bp) p45 & p47 (398bp) 18F1 & 18R1 (568bp) 18F1 & 18SU1310R (673bp) 18f1 & ss3 (1168bp) 18S C & EUK329(1247bp) 18su467F & 18R1 (778bp) 18su467F & 18SU1310R (883bp) ss5 & 18R1 (1183bp) ss5 & 18SU1310R (1288bp) ss5 & ss3 (1783bp) 18su467f & ss3 (1378bp) U18SF & 18S D (1285bp)

Chlamydomonas reinhardtii 18S rRNA gene Base pair:

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1792