Major QTLs for Grain Yield and Component Traits in

Major QTLs for Grain Yield and Component Traits in Rice QTL

Ch

Marker interval

LOD

Trait

Parents

Populations

Associated traits

Reference

sd1

1

RZ730-RZ801

2.53

PH

IR64 x Azucena

DH

TN

Hemamalini et al., 2000

phs4.1

4

RG476-RG214

7.82

PH

CT9993 x IR62266

DH

GY

Babu et al., 2003

gpps4.1

4

RG214-RG620

3.58

G/P

DH

-

Babu et al., 2003

qgy3.1

3

2.6

GY

DH

PN

Lanceras et al., 2004

qgy4.3

4

RG348/RM22-RZ329 RM120RZ675/RM274

2.57

GY

DH

PN

Lanceras et al., 2004

qgy3.2

3

RG348/RM22-RZ329

2.84

GY

DH

PN

Lanceras et al., 2004

qGY-2a

2

RM561-RM341

4.26

GY

RILs(F9)

SF, GW

Zou et al., 2005

qGY-2b

2

RM526-RM525

4.23

GY

RILs(F9)

SF, GW

Zou et al., 2005

qTGW-2b

2

RM525-RM318

3.07

TGW

RILs(F9)

GY

Zou et al., 2005

qPN-4a

4

RM451-RM317

4.61

PN

RILs(F9)

-

Zou et al., 2005

qPN-8

8

RM404-RM339

3.62

PN

RILs(F9)

SF,GY

Zou et al., 2005

qSN-4b

4

RM255-RM349

13.2

SN

RILs(F9)

-

Zou et al., 2005

qSN-8

8

RM80-RM149

6.66

SN

RILs(F9)

-

Zou et al., 2005

qSN-9

9

RM215-RM245

12.88

SN

CT9993 x IR62266 CT9993-5-10-1-M x IR62266-42-6-2 CT9993-5-10-1-M x IR62266-42-6-2 CT9993-5-10-1-M x IR62266-42-6-2 Zhenshan 97B x IRAT109 Zhenshan 97B x IRAT109 Zhenshan 97B x IRAT109 Zhenshan 97B x IRAT109 Zhenshan 97B x IRAT109 Zhenshan 97B x IRAT109 Zhenshan 97B x IRAT109 Zhenshan 97B x IRAT109

RILs(F9)

-

Zou et al., 2005

qtl1.1

1

RM3103-RM511

5.1

PH

F3 derived lines

-

Bernier et al., 2007

qDTY1.1

1

EM11-RG109

43.5

GY

Way Rarem x Vandana CT9993-5-10-1-M x IR62266-42-6-2

DH

SDW

Kumar et al.,2007

qDTY12.1

12

RM201-RG667

34

GY

Way Rarem x Vandana

F3 derived lines

Bernier et al.,2007

qtl3.1

3

RM277-RM260

4.8

BIO

Way Rarem x Vandana

F3 derived lines

qtl6.1

6

RM523-RM545

4.8

BIO

Way Rarem x Vandana

F3 derived lines

HI, PN,PH HI,PN, DTH HI,PN, DTH

Bernier et al.,2007 Bernier et al.,2007

qtl2.1

2

RM7195-RM28166

4

PN

Way Rarem x Vandana

F3 derived lines

-

Bernier et al.,2007

qtl6.1

6

RM1367-RM250

4

PN

Way Rarem x Vandana

F3 derived lines

-

Bernier et al.,2007

qGy10

10

RM242-RM278/RZ12

8.78

GY

Tequing x Lemont

BILs

PN, GW

Zhao et al., 2008

qGy7

7

RM458C-RM139

12.17

GY

Tequing x Lemont

BILs

PN, GW

Zhao et al., 2008

qGy5

5

RM126-RM483

7.82

GY

Tequing x Lemont

BILs

PN, GW

Zhao et al., 2008

qGy8

8

RM509-RM163

13.24

GY

BILs

PN, GW

Zhao et al., 2008

qPL-4a

4

RM470–RM451

10.02

PL

RILs(F10)

-

Liu et al.,2008

qPL-8

8

RM149–RM477

7.04

PL

RILs(F10)

SBN

Liu et al.,2008

qPL-9

9

RM553–RM160

4.72

PL

Tequing x Lemont Zhenshan 97B x IRAT109 Zhenshan 97B x IRAT109 Zhenshan 97B x IRAT109

RILs(F10)

-

Liu et al.,2008

qdw2.1

2

RM495-RM1

2.63

SDW

IR 64 x INRC10192

RILs(F7)

-

Srividhya et al., 2011

qsdw2.2

2

RM262-RM106

2.51

SDW

IR 64 x INRC10192

RILs(F7)

-

Srividhya et al., 2011

qsdw9.1

9

RM561-RM341

3.03

SDW

IR 64 x INRC10192

RILs(F7)

-

Srividhya et al., 2011

qDTY8.1

8

RM339-RM210

5.1

GY

Swarna x Basmati 334

RILs(F3:4)

GN

Vikram et al.,2012

qDTY10.1

10

3.9

GY

Swarna x Basmati 334

RILs(F3:4)

GN

Vikram et al.,2012

QRF6.1

6

9

HI

IR62266 x Norungan

RILs

-

Suji et al.,2012

QRF6.2

6

10.2

HI

IR62266 x Norungan

RILs

-

Suji et al.,2012

QRF6.3

6

RM223-RM210 Pgi-2RM527/RM238B RM510RZ398/RM225/RM584 RM510RZ398/RM225/RM584

9.6

HI

RILs

-

Suji et al.,2012

QDS_9.1

9

5.5

GY

BILs(BC2F2:3)

PL, GW

Swamy et al., 2013

QDS_9.2

9

11.7

GY

BILs(BC2F2:3)

PL, GW

Swamy et al., 2013

QDS_2.1

2

RM453-RM491 RM460/RM409RZ422/RM434 RM460/RM409RZ422/RM434

3.4

GY

BILs(BC2F2:3)

PL, GW

Swamy et al., 2013

QDS_10.1

10

RM236-RM279

10

GY

BILs(BC2F3:4)

PL, GW

Swamy et al., 2013

QDS_4.1

4

RM269-RM304

6.5

GY

IR62266 x Norungan IR64 x IR77298-5-6-B18(Aday Sel) IR64 x IR77298-5-6-B18 and -11(Aday Sel) IR64 x IR77298-5-6-B18(Aday Sel) IR64 x IR77298-14-12-B-10(Aday Sel) IR64 x IR77298-14-12(Aday Sel)

BILs(BC2F3:4)

PL, GW

Swamy et al., 2013

QGyp1

1

RM286-RM332

9.66

GY

IR 64 x Tarom molaei

BILs(BC2F6)

TN, SF

Wang et al.,2013

QGyp11

11

RM13-RM434

2.8

GY

IR 64 x Tarom molaei

BILs(BC2F6)

TN, SF

Wang et al.,2013

QGyp2

2

RM5-RM237

3.72

GY

Teqing x Tarom Molaei

BILs(BC2F6)

TN, SF

Wang et al.,2013

QGyp10

10

RM16-RM319

3.12

GY

Teqing x Tarom Molaei

BILs(BC2F6)

TN, SF

Wang et al.,2013

QFgp1

1

RM5-RM237

4.43

FG/P

IR 64 x Tarom molaei

BILs(BC2F6)

SF, GY

Wang et al.,2013

QFgp6

6

RM136-RM527B

5.06

FG/P

IR 64 x Tarom molaei

BILs(BC2F6)

GW

Wang et al.,2013

QFgp11

11

RM286-RM332

2.62

FG/P

IR 64 x Tarom molaei

BILs(BC2F6)

SF,GY

Wang et al.,2013

QFgp9

9

RM242-RM201

9.3

FG/P

Teqing x Tarom Molaei

BILs(BC2F6)

-

Wang et al.,2013

QPn9a

9

OSR28–RM189

2.54

PN/P

IR 64 x Tarom molaei

BILs(BC2F6)

-

Wang et al.,2013

QSf6

6

RM261-RM471

1.94

SF

IR 64 x Tarom molaei

BILs(BC2F6)

GY, HI,PF

Wang et al.,2013

QSf1

1

RM286-RM332

6.59

SF

Teqing x Tarom Molaei

BILs(BC2F6)

GY, FG

Wang et al.,2013

QSf7

7

RM421-RM87

3.08

SF

Teqing x Tarom Molaei

BILs(BC2F6)

-

Wang et al.,2013

qDTH6.1

6

RM586-RM217

6.4

PH

TDK1 x IR55419-04

BILs(BC1F3:4)

-

Dixit et al., 2014b

qDTH3.1

3

RM275-RM528

3.4

PH

TDK1 x IR55419-05

BILs(BC1F3:4)

qPH1.1

1

RM315-RM568

16.3

PH

RILs(F6)

-

Trijatmiko et al.,2014

qYP-12-1

12

RZ488-RG477

2.92

YP

RILs(F2:7)

-

Xing et al., 2014

qDTY 3.4

3

RG191-RM546

4.29

GY

RILs (F11)

-

Verma et al., 2014

qDTY 1.3

1

RM411-RM55

3.23

GY

RILs (F11)

-

Verma et al., 2014

qDTY 11.1

11

RM24-RM449

7.39

GY

RILs (F11)

-

Verma et al., 2014

qDTY 3.3

3

RG191-RM546

4.38

GY

IR64X IRAT177 Xiaobaijingzi x Kongyu131 Danteshwari x Dagaddeshi Danteshwari x Dagaddeshi Danteshwari x Dagaddeshi Danteshwari x Dagaddeshi

RILs (F11)

-

Verma et al., 2014

qDTY3.1

3

RM275-RM340

6.3

GY

TDK1 x IR55419-04

BILs(BC1F3:4)

-

Dixit et al., 2014

qDTY6.1

6

RM168-RM468

7.5

GY

TDK1 x IR55419-04

BILs(BC1F3:4)

-

Dixit et al., 2014

qDTY6.2

6

RM586-RM217

7

GY

TDK1 x IR55419-04

BILs(BC1F3:4)

-

Dixit et al., 2014

qDTY6.3

6

RM168-RM468

4.3

GY

TDK1 x IR55419-04

BILs(BC1F3:4)

-

Dixit et al., 2014

qGY1.1

1

RM212-RM414

3.2

IR64X IRAT177

RILs(F6)

-

Trijatmiko et al., 2014

qTGW1

1

RM315-RM431

5.66

YP 1,000 Gw

Swarna x WAB 450

BILs(BC1F6)

-

Sangodele et al., 2014

qGW3.1

3

RM489-RM36

3.09

GW/P

Swarna x WAB 450

BILs(BC1F6)

-

Sangodele et al., 2014

qGW3.2

3

RM563-RM16

3.11

GW/P

Swarna x WAB 450

BILs(BC1F6)

-

Sangodele et al., 2014

qDTF3.1

3

RM121-M541

9.5

DTF

TDK1 x IR55419-04

BILs(BC1F3:4)

GY, HI

Dixit et al., 2014

qDTF3.1

3

RM586-RM217

10

DTF

TDK1 x IR55419-04

BILs(BC1F3:4)

GY,HI

Dixit et al., 2014

Dixit et al., 2014b

qDTF6.1

6

RM168-RM468

3.7

DTF

TDK1 x IR55419-04

BILs(BC1F3:4)

GY, HI

Dixit et al., 2014

qDTH8.1

8

RM547-RM978

3.1

DTH

IR64X IRAT177

RILs(F6)

GY, HI

Trijatmiko et al., 2014

qDTH10.1

10

RM596-RM333

3.9 1

DTH

IR64X IRAT177

RILs(F6)

GY, HI

Trijatmiko et al., 2014

qGN7

7

RM180-RM455

3.52

G/P

Swarna x WAB 450

BILs(BC1F6)

PT

Sangodele et al., 2014

qGPP2.1

2

RM279-RM452

3.1

G/P

IR64X IRAT177

RILs(F6)

-

Trijatmiko et al., 2014

qGPP8.1

8

RM547-RM978

4

G/P

IR64X IRAT177

RILs(F6)

-

Trijatmiko et al., 2014

qGPP8.2

8

RM339-RM223

6

G/P

RILs(F6)

GY

Trijatmiko et al., 2014

qPN-6-2

6

RM589-RM402

4.25

PN/P

RILs(F2:7)

-

Xing et al., 2014

qPN-8

8

RM515-RM547

3.25

PN/P

IR64X IRAT177 Xiaobaijingzi x Kongyu131 Xiaobaijingzi x Kongyu131

RILs(F2:7)

-

Xing et al., 2014

qSPP4.1

4

RM451-RM348

3.7

SN/PA

IR64X IRAT177

RILs(F6)

Trijatmiko et al., 2014

qPSS8.1

8

5.3

PSS

IR64X IRAT177

RILs(F6)

PN DTH, G/P, PN

qPSS8.2

8

RM339-RM223

7.7

PSS

IR64X IRAT177

GY

Trijatmiko et al., 2014

qYLD1.2

1

RM237-RM128

3.92

GY

Appo x Moroberekan

-

Sellamuthu et al., 2015

qYLD2.1

2

RM145-RM300

3.03

GY

Appo x Moroberekan

-

Sellamuthu et al., 2015

qYLD4.2

4

RM252-RM303

3.56

GY

Appo x Moroberekan

-

Sellamuthu et al., 2015

qYLD6.3

6

RM527-RM3

3.12

GY

Appo x Moroberekan

-

Sellamuthu et al., 2015

qYLD3

3

RM545-RM186

3.83

GY

Appo x Moroberekan

-

Sellamuthu et al., 2015

qYLD4.1

4

RM261-RM273

4.71

GY

Appo x Moroberekan

-

Sellamuthu et al., 2015

qYLD6.3

6

RM3-RM340

4.38

GY

Appo x Moroberekan

-

Sellamuthu et al., 2015

qYLD12

12

RM519-RM17

3.58

GY

Appo x Moroberekan

-

Sellamuthu et al., 2015

qHI8.1

8

RM404-RM233

3.26

HI

Appo x Moroberekan

-

Sellamuthu et al., 2015

qHI3

3

RM545-RM186

4.28

HI

Appo x Moroberekan

-

Sellamuthu et al., 2015

qHI4

4

RM261-RM273

3.56

HI

Appo x Moroberekan

RILs(F6) BILs(BC1F3:4 andBC1F3:6) BILs(BC1F3:4 andBC1F3:6) BILs(BC1F3:4 andBC1F3:6) BILs(BC1F3:4 andBC1F3:6) BILs(BC1F3:4 andBC1F3:6) BILs(BC1F3:4 andBC1F3:6) BILs(BC1F3:4 andBC1F3:6) BILs(BC1F3:4 andBC1F3:6) BILs(BC1F3:4 andBC1F3:6) BILs(BC1F3:4 andBC1F3:6) BILs(BC1F3:4 andBC1F3:6)

-

Sellamuthu et al., 2015

RM547-RM978

Trijatmiko et al., 2014

qHI6.3

6

RM3-RM340

6.22

HI

Appo x Moroberekan

qHI12.1

12

RM519-RM17

3.1

HI

Appo x Moroberekan

qDMY1.3

1

RM246-RM128

3.11

DMY

Appo x Moroberekan

qDMY9

9

RM257-RM108

3.04

DMY

Appo x Moroberekan

qDMY1.1

1

RM220-RM600

4.12

DMY

Appo x Moroberekan

qDMY12

12

RM257-RM108

3.04

Appo x Moroberekan

qHGW6.1

6

RM204-RM253

5.43

qHGW10.1

10

RM222-S10001

4.38

qHGW1

1

RM220-RM600

4.3

qHGW2.2

2

RM425-RM166

4.45

qHGW4

4

RM348-RM127

4.12

qHGW8

8

RM506-RM38

5.61

DMY 1,000 Gw 1,000 Gw 1,000 Gw 1,000 Gw 1,000 Gw 1,000 Gw

qFGP3

3

RM130-RM514

3.54

FG/PA

Appo x Moroberekan

qFGP10

10

RM147-RM496

3.17

FG/PA

Appo x Moroberekan

qNOP1.2

1

RM302-RM212

3.01

PN

Appo x Moroberekan

qNSP4

4

RM252-RM303

4.55

SN/PA

Appo x Moroberekan

qSRP4.1

4

RM252-RM348

5.04

SN/PA

Appo x Moroberekan

qSRP9

9

RM410-RM257

3.1

SN/PA

Appo x Moroberekan

qPRP4

4

RM303-RM348

3.99

SN/PA

Appo x Moroberekan

qPNX2

2

RM145-RM300

3.41

PE

Appo x Moroberekan

Appo x Moroberekan Appo x Moroberekan Appo x Moroberekan Appo x Moroberekan Appo x Moroberekan Appo x Moroberekan

BILs(BC1F3:4 andBC1F3:6) BILs(BC1F3:4 andBC1F3:6) BILs(BC1F3:4 andBC1F3:6) BILs(BC1F3:4 andBC1F3:6) BILs(BC1F3:4 andBC1F3:6) BILs(BC1F3:4 andBC1F3:6) BILs(BC1F3:4 andBC1F3:6) BILs(BC1F3:4 andBC1F3:6) BILs(BC1F3:4 andBC1F3:6) BILs(BC1F3:4 andBC1F3:6) BILs(BC1F3:4 andBC1F3:6) BILs(BC1F3:4 andBC1F3:6) BILs(BC1F3:4 andBC1F3:6) BILs(BC1F3:4 andBC1F3:6) BILs(BC1F3:4 andBC1F3:6) BILs(BC1F3:4 andBC1F3:6) BILs(BC1F3:4 andBC1F3:6) BILs(BC1F3:4 andBC1F3:6) BILs(BC1F3:4 andBC1F3:6) BILs(BC1F3:4 andBC1F3:6)

-

Sellamuthu et al., 2015

-

Sellamuthu et al., 2015

-

Sellamuthu et al., 2015

-

Sellamuthu et al., 2015

-

Sellamuthu et al., 2015

-

Sellamuthu et al., 2015

-

Sellamuthu et al., 2015

-

Sellamuthu et al., 2015

DMY

Sellamuthu et al., 2015

FD

Sellamuthu et al., 2015

-

Sellamuthu et al., 2015

-

Sellamuthu et al., 2015

-

Sellamuthu et al., 2015

-

Sellamuthu et al., 2015

-

Sellamuthu et al., 2015

-

Sellamuthu et al., 2015

-

Sellamuthu et al., 2015

-

Sellamuthu et al., 2015

-

Sellamuthu et al., 2015

GY

Sellamuthu et al., 2015

BILs(BC1F3:4 andBC1F3:6) Sellamuthu et al., 2015 BILs(BC1F3:4 qPNX6 6 RM176-RM494 3.43 PE Appo x Moroberekan andBC1F3:6) Sellamuthu et al., 2015 BILs(BC1F3:4 qPNX8 8 RM223-RM210 3.4 PE Appo x Moroberekan andBC1F3:6) Sellamuthu et al., 2015 BILs(BC1F3:4 qPNL11 11 RM209-RM224 3.32 PL Appo x Moroberekan andBC1F3:6) Sellamuthu et al., 2015 BILs(BC1F3:4 qPNL2 2 RM525-RM318 4.24 PL Appo x Moroberekan andBC1F3:6) Sellamuthu et al., 2015 BILs(BC1F3:4 qPNL5 5 RM163-RM440 5.65 PL Appo x Moroberekan andBC1F3:6) Sellamuthu et al., 2015 BILs(BC1F3:4 qSPF8 8 RM404-RM223 3.36 SF Appo x Moroberekan andBC1F3:6) HI Sellamuthu et al., 2015 BILs(BC1F3:4 qSPF3 3 RM545-RM186 3.22 SF Appo x Moroberekan andBC1F3:6) GY, HI Sellamuthu et al., 2015 BILs(BC1F3:4 qPNF3.1 3 RM545-RM186 3.58 PF Appo x Moroberekan andBC1F3:6) GY,HI Sellamuthu et al., 2015 BILs(BC1F3:4 qPNF4.2 4 RM261-RM273 3.54 PF Appo x Moroberekan andBC1F3:6) GY,HI Sellamuthu et al., 2015 BILs(BC1F3:4 qPNF9 9 RM257-RM108 3.28 PF Appo x Moroberekan andBC1F3:6) DMY Sellamuthu et al., 2015 BILs(BC1F3:4 qPNF3.1 3 RM545-RM186 3.04 PF Appo x Moroberekan andBC1F3:6) GY, HI Sellamuthu et al., 2015 BILs(BC1F3:4 GY, DTF, qPNF6.3 6 RM3-RM340 3.23 PF Appo x Moroberekan andBC1F3:6) HI Sellamuthu et al., 2015 BILs(BC1F3:4 qPDL1.2 1 RM488-RM237 3.02 PEL Appo x Moroberekan andBC1F3:6) GY Sellamuthu et al., 2015 BILs(BC1F3:4 qPDL6 6 RM527-RM3 3.23 PEL Appo x Moroberekan andBC1F3:6) GY,HI Sellamuthu et al., 2015 DTF- Days to Flowering; DMY- DTH-Total Dry Matter Yield; Days to heading; FD- Flowering Days; FG- Filled Grain; FG/P- Filled Grain per Plant; GNqPNX5.2

5

RM164-RM430

3.6

PE

Appo x Moroberekan

Grain Number; G/P- Grains per Panicle; GW-Grain Weight; GW/P- Grain Weight Per Plant; GY- Grain Yield; HI- Harvest Index; PE- Panicle Exertion; PELPeduncle Length; PF- Panicle Fertility; PH-Plant Height; PL- Panicle Length; PN-Panicle Number; PN/P- Panicle Number/Plant; PT-Productive Tiller; SBNSecondary Branch Number; SDW-Shoot Dry weight; SF- Spikelet Fertility; SN- Spikelet Number; SN/PA- Number of Spikelets/ Panicle; SPP- Spikelets Per Plant; TN- Tiller Number