Mutation in a5(IV) Collagen Chain Gene in Nonfamilial ... - JASN

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deafness. Mutations in the COL4A5 gene encoding the Type IV collagen a5 chain ... a5 chain protein. Key Words: A/port syndrome. glomerular basement mem- brane. ...... in a5(N) collagen chain gene converting a conserved cysteine to serine in ... a4(IV) collagen genes in autosomal recessive. Alport syndrome. Nature.
Mutation in a5(IV) Collagen Nonfamilial Hematuria1

Chain

Kousaku

Kitagawa,

lijima,

Yoshikazu

Sado,

Koichi Hajime

Nakanishi,

Kazumoto

Nakamura,

and

Norishige

K. Kitagawa, K. Nakanishi, K. lijima, H. Nishio, K. Sano, H. Nakamura, N. Yoshikawa, Department of Pediatrics, Kobe University School of Medicine, Kobe, Japan V. Sado, Japan

Shigei

(J. Am.

Soc.

Medical

Nephrol.

Research 1995;

Institute,

Okayama.

ABSTRACT Alport syndrome is an inherited disorder characterized by progressive nephritis with ultrastructural baschanges

membrane the COL4A5

and neurosensory gene encoding

of

the

glomerular

basement

deafness. Mutations the Type IV collagen

chain have been reported to occur In patients X-linked Alport syndrome. A girl with hematuric phritis, characteristic basket-weave glomerular

codon

in

that would domain

229, amino tion

acid

enzyme

be expected with

AflIll

only

to result

209, instead

residues.

Gene

tracking

demonstrated

that

her

mother

base-

restnicwas

normal. These findings represent a new mutation of the X-linked Alport syndrome in this patient and demonstrate that a COL4A5 gene mutation causes the abnormal expression of Type IV collagen a5 chain protein. Key Words:

A/port

brane. COL4A5. ment gel

syndrome. deletion

glomerular

and

mutation

basement detection

ally

presents

Kimihiko

Sano,

syndrome is a familial disorder that generruns a progressive course ( 1 ). It usually as hematuria in childhood and is associated

neurosensory

deafness.

Characteristic

alter-

enclosing electron-lucent lacunae, which frequently contain small, dense particles. When diffuse, these changes are diagnostic of Alport syndrome (5). A widespread basket-weave pattern of the GBM has also been observed in patients with hematuria who have no family history of nephritis, and it has been suggested that such GBM changes in patients with nonfamilial hematuria may represent new mutations of

nal

normal

with

lport

with

ne-

in a noncolofthe

A

the

(C; nucleotide 4728 from the 5’ end) in exon 50. This novel mutation alters the frame and introduces a translation stop

lagenous

Nishio,

Yoshikawa2

a5 with

ment membrane changes, and abnormal expression of the Type IV collagen a5 chain immunohistochemically, but no family history of nephritis, was identified. Mutation detection enhancement gel electrophoresis of the polymerase chain reaction-amplified exons of COL4A5 from this patient revealed a sequence vanant in the exon 50 region. Sequence analysis of her polymerase chain reaction product demonstrated a single-base deletion reading

Hisahide

in

ations of the glomerular basement membrane (GBM) are observed on electron microscopy (2-4). The GBM shows irregular thickening with replication of the lamina densa, forming a “basket-weave” pattern and

6:264-268)

ket-weave

Gene

memenhance-

Alport

syndrome

disease.

and

(6-8).

syndrome

Alport

is a genetically

X-hinked

autosomal

heterogeneous

dominant,

recessive

autosomal

modes

re-

dominant,

of inheritance

have

been reported (9-1 1 ). However, the majority of published Alport pedigrees show X-linked dominant inheritance (10). The characteristic GBM alterations in patients with this syndrome suggest that the defect is expressed in

one of the abnormalities

structural in

components

of the

GBM,

and

Type IV collagen have been in its pathogenesls. This Type IV of six a chains ( 1 2). Mutations In

the

heavily implicated collagen is composed the Type IV collagen a5 chain gene (COL4A5) have been reported in patients with X-hinked Alport syndrome ( 13, 14), and our recent immunohistochemical study showed abnormal expression of the Type IV collagen a5 chain in such patients ( 15). In this study, we observed similar abnormal expression of the Type IV collagen ce5 chain in a girl with nonfamilial hematuna

and

Analysis

patient tion

tion

of

widespread the 3’

end

basket-weave of the COL4A5

GBM changes. gene in this

revealed a novel, single-base deletion mutain exon 50. However, gene tracking with restricenzyme AfilIl demonstrated that her mother was

normal. mutation demonstrate

abnormal protein.

These findings of the X-linked

that expression

in this

patient

indicate

a new

Alport syndrome. The results a COL4A5 gene mutation causes of the Type IV collagen a5 chain

METHODS ReceIved October 10, 1994. Accepted 2 correspondence to Dr. N. Yoshikawa, 5chool

of Medicine,

7-Kusunlki-cho,

January 2, 1995. Departmentof Pediatrics,

chuo-ku,

Kobe,

650 Japan.

1046.6673/0602-0264$03.00/0 Journal of the American society of Nephrology copyright C 1995 by the American Society of Nephrology

264

Kobe

UnIversity

Patient Patient

Y.O.

was

an

1 1 -yr-old

Japanese

girl

referred

for

evaluation of hematuria and proteinuria. At the age of 1 .9 yr, she presented with macroscopic hematuria associated with

Volume

6

.

Number

2

.

1995

Kitagawa

upper respiratory and proteinuria maturia associated of 1 1 , her blood tigations

infection and fever. Microscopic hematuria had been persistent. and macroscopic hewith fever had been recurrent. At the age pressure was normal and laboratory inves-

showed

teinuria gram

(0.5 and

persistent

microscopic

g/day) and ophthalmologic

Percutaneous Light microscopy

renal

and revealed

normal skin

hematuria

and

pro-

renal function. Her audioexamination were normal.

biopsy specimens minor glomerular

were taken. abnormalities

with small foci of tubular atrophy. electron microscopy showed a widespread basket-weave pattern of the GBM (Figure 1 ), and immunofluorescence microscopy demonstrated negative ghomerular staining for immunoglobulin (Ig)G. IgA, IgM. Clq, C4, C3, and fibrinogen. The patient’s 14-yr-old brother, 40-yr-old father. and 36-yr-old mother had no signs of renal disease or deafness, and their urinalysis

was

normal.

There

disease on the paternal was no family history

was

no

apparent

or maternal of consanguinity.

history

sides

of the

of the

family.

Indirect Immunofluorescence. were snap-frozen in a dry ice and into

4-sm

5 mm, Kidney

There

air

and rinsed and skin

three tissue

dried,

fixed

and bath.

in 95%

skin

tissues

They

ethanol

were

cut

at 4#{176}C for

times with PBS at room temperature. sections for immunostaining with primary antibody against the Type IV collagen aS chain were denatured in 6 M urea-0. 1 M glycine HC1 buffer (pH 3.5) at 4#{176}C for 1 h ( 18) and then washed three times with PBS before reacting with primary antibody. The sections were stained by an Indirect method with the primary antibodies against the cr3, cr4, and cr5 chains. After reaction for 45 mm at room temperature, secondary antibodies, fluorescein isothlocyanate-conjugated goat IF(ab’)21 anti-rat IgG, and fluorescein isothiocyanate-conjugated goat IF(ab’)21 anti-mouse IgG (Organon

ondary The

renal

sections,

Kidney acetone

et al

Teknika-Cappel,

antibodies sections were

flecting

DNA

Durham,

were diluted viewed with (Olympus

microscope

NC)

were

added.

to 1 :60 with PBS before an Olympus BH2-RFCA Optical Co. , Tokyo. Japan).

Sec-

use. re-

Analysis

Pathology Electron

Microscopy.

The

portion

of

tissue

for

electron

microscopy was fixed in phosphate-buffered 5% ghutaraldehyde for 2 h and postflxed for 1 h in 2% osmium tetroxide. It was subsequently processed through graded alcohol and embedded in Epon 8 1 2 resin. Ultrathin sections were cut on a LKB ultramicrotome, stained with uranyl acetate and lead citrate, and examined with a JEM- 100S electron microscope (JEOL, Tokyo. Japan). Two glomeruhi were examined. Antibodies. Mouse monoclonal antibody against the Type IV collagen a3 chain NC 1 (mAb 1 7) ( 1 6) was kindly provided by Dr. J. Wieslander (Statens Seruminstitut, Copenhagen, Denmark). Monoclonal antibody against the Type IV collagen cr4 chain

vided

NC 1 (mAb85)

by Dr.

R. J. Butkowski

( 1 6). Monoclonal chain

antibody

NC 1 peptide

a derived SKPQSE) buffered

obtained

(H5

from

(University

against

1 ) was

made

the by

mice

was

kindly

of Minnesota, Type IV collagen immunizing

rats

pro-

MN) cr5

with

nonconsensus amino acid sequence (VDVSDMF( 1 7). mAb85 was diluted to 1 :20 with phosphatesaline (PBS) immunohistochemlcal study. The other

antibodies

were

not

diluted

for

immunohistochemical

study.

DNA Extraction and Polymerase Chain Reaction. Genomic DNA was extracted from peripheral blood leukocytes, as described by Sambrook et al. ( 19). The concentration of the extracted DNA was adjusted to 50 ng/.cL and used as template for polymerase chain reaction (PCR) amphification of the exon 47, 48, 49, 50, and 5 1 regions of COL4A5. The following oligonucleoticie primers were synthesized for the intron sequence adjacent to the exon. according to published sequence data (20-22). Exon 47. F;(5’-GTCCAGATGGATFGCAAGGTC-3’) R;(5’-Tl’CGAATFCCAGTAGGAAATFAGATAT-3’) Exon

48.

F;(5’-CTFTACTGT’ITFCTCTCC-3’) R;(5’-GTCACAGCTAAATCAATGCC-3’)

Exon

49.

F;(5’-GACTCTAGAAAGGCCATTGCACTGGTF-3’) R;(5’-GACAAATGCAAGGAAGAGTG-3’)

Exon

50.

F;(5’-GCGGCACATTTTTCCTFGTC-3’) R;(5’-GGACCTGAATTAAAGCTATAAGCA-3’) Exon 51. F;(5’-TGTCTTATTTCTTATTTCCC-3’)

R;(5’-CAATGAGACACTGCATCCTAGGA-3’) Amplification

5pm

.

Figure 1 Electron micrograph of renal biopsy specimen Patient Y.O. A widespread basket-weave pattern ofthe was present (original magnification, x5,000).

Journal

of the American

Society

of Nephrology

from GBM

was

performed

with

50

ng

of genomic

DNA

template, 25 pmol of each primer, 10 nmol of each deoxyribonucleoside 5’-triphosphate (Takara Shuzo Co. , Otsu, Japan), and 0.5 U of AmpliTaq DNA polymerase (Perkin-Elmer Cetus, Norwalk, CT) under buffered conditions ( 10 mM TrisHC1IpH 8.31, 50 mM KC1, 2.0 mM MgCl2, 0.01% gelatin) in a total volume of25 pL. Forty cycles of94#{176}Cfor 1 mm, 45#{176}C for 2 mm, and 72#{176}C for 3 mm were carried out. Heteroduplex Analysis in Mutation Detection Enhancement Gel. The PCR products from the patient and from five normal control subjects (males) were combined to form heteroduphexes, heated to 95#{176}C,and slowly cooled to room temperature. Electrophoresis of the PCR products of exon 50 in mutation detection enhancement (MDE) gel (AT Biochem Inc., Malvern, PA) (40 cm long and 1 mm thick) was performed for 24 to 30 h at 800 V. and the DNA fragments were visualized under ultraviolet illumination after staining with ethidium bromide. DNA Sequence. The fragment from Patient Y.O. was separated on a 1% agarose gel, purified with Gene Clean II Kit (BIO 101 Inc., CA), and ligated into pT7Blue Vector (NOVA-

265

Mutation

COL4A5

GEN,

Madison,

in Nonfamilial

WI), and

transformation

Hematuria

the ligation

of competent were isolated

taming clones ALF DNA Sequencer II (Pharmacia den) with an AutoRead Sequencing and the sequences were analyzed software

(International

product

was

used

for the

XL 1 -Blue cells. Six insert-conand sequenced on an automated

Biotechnologies

Biotech, Uppsala, SweKit (Pharmacia Blotech), with MacVector Ver.4. 1.4 Inc. , New Haven, CT).

Family Tracking. For family tracking, PCR-amphified DNA from the patient and her mother were digested with restriction enzyme AflIII (Gibco BRL, Galthersburg, MD) and electrophoresed on a 3% agarose gel.

RESULTS Indirect lagen cr3, the

immunofluorescence study of Type IV colin the patient showed segmental distributions of cr4, and cr5 chains in the GBM (Figure 2A) and of cr5 chain in the epidermal basement membrane

(Figure 3A). Examination from the patient’s mother

of a skin revealed

tion of the a5 chain brane (Figure 3B). The PCR products

epidermal

in the

biopsy a diffuse basement

specimen distribumem-

flanking exons 47 to 5 1 obtained from the patient and five healthy male controls were analyzed by 3% agarose gel electrophoresis, which showed that the apparent sizes of the amplified products of each exon were the same In all six subjects (data not shown). These results demonstrated that the putative mutations probably did not involve large

deletions mutations,

These further

or

Insertions, or

changes

PCR products by screening

but

small

inversions,

of only a few nucleotides. of each exon were

for

mutations

by

point analyzed

heteroduplex

5Otm 3. Skin biopsy specimens stained with anti-a5(IV) antibody, from Patient V.0. (A) and her mother (B). Segmental binding of anti-a5(lV) antibody to the epidermal basement membrane of the patient’s skin (A) was observed. Note the normal binding areas (black arrow) and the areas with no binding (white arrow) in the epidermal basement membrane. Diffuse linear binding of the anti-a5(lV) antibody to Figure

the epidermal mother’s skin

basement (B) was

membrane

observed

(black

(original

arrow)

of the

magnification,

x410).

in the MDE gel. For exons 47, 48, 49, and 51, the heteroduplex DNA samples from the controls and patient yielded single bands of the same size (data not shown). Analysis ofexon 50 suggested the presence of a mutation in the patient (Figure 4). The five controls showed single bands of 228 base pairs (bp), but Patient Y.O. showed two bands. The band intensity of analysis

the slower moving heteroduplex DNA caused by the conformational difference was approximately onethird that of the faster moving homoduplex DNA. The PCR product from the patient was characterized further by DNA sequencing, which showed a singlebase (C; nucleotide 4728) deletion in the 3’ end of exon 50. This deletion changes the reading frame and introduces a premature stop codon (TGA) 29 bp downstream of the mutation, resulting in a message for a truncated Type IV collagen cr5 molecule lacking part of the NC domain (Figure 5). Of six clones isolated, two showed the wild-type and four showed the mutanttype sequence, indicating that the patient was heterozygous for the mutation in exon 50.

Yo

Figure 2. Glomerulus, stained with anti-cr5(lV) antibody, of Patient V.0. (A) and a differential interference micrograph of the same section (B) for spatial clarity. Glomerulus, stained with anti-cr5(IV) antibody, ofa normal control (C). Segmental linear binding of anti-cr5(lV) antibody to the patient’s GBM (A) was observed. Diffuse linear binding of the anti-a5(IV) antibody to the GBM ofthe normal control (C) was observed (original magnification, x250).

266

M

1

2

3

4

5

Figure 4. MDE gel analysis of exon 50 regIon PCR products. Lane YO, DNA derived from Patient V.0.; Lanes 1 to 5, DNA from normal controls. Patient V.0. showed two bands, whereas the five controls showed single bands.

Volume

#{243}Number ‘

2

.

1995

Kitagawa

et al

V Wild type

Mutant type

4714

GTA

GAT

GTG

TCA

GAC

ATG

TTC

AGT

AAA

CCT

CAG

TCA

GAA

ACG

CTG

AAA

GCA

GGA

1572

V

D

V

S

D

M

F

S

K

P

Q

S

E

T

L

K

A

C

4768

GAC

TTG

AGG

ACA

CGA

ATT

AGC

CGA

TGT

CAA

GTG

TGC

ATG

AAG

AGG

ACT

TAA

1590

D

L

R

T

R

I

S

R

C

Q

V

C

M

K

R

T

4714

GTA

CAT

CTC

TCA

GAA

TGT

TCA

CTA

AAC

CTC

ACT

CAC

AAA

CCC

TGA

1572

V

D

V

S

E

C

S

V

N

L

S

Q

K

R

Figure 5. Nucleotide sequence of the COL4A5 gene and the deduced amino acid sequence of the Type IV collagen cr5 chain of Patient V.0. *The TGA stop codon introduced by the frameshift. The monoclonal antibody against the Type IV collagen cr5 chain recognized the underlined amino acid sequence. The single-base deletion (C; nucleotide 4728) is indicated by an arrowhead.

When controls (restriction

the was

amplified

DNA

digested site;

(228

with

bp)

from

restriction

A/CATGT),

two

the

five

enzyme

fragments

AflIll

( 189

and

39 bp) were produced, and the 189-bp fragments were detected by 3% agarose gel electrophoresis. When the patient’s amplified DNA was subjected to this treatment. an undigested 227-bp band appeared, as a result of the missing MLIII restriction site caused by the change from ACATGT to AATGT at the deletion point, in addition to the normal 189-bp fragment. The patient’s mother had only the normal 189-bp fragment;

DNA

could

not

samples

from

other

members

of the

family

be obtained.

DISCUSSION We have hematuria basket-weave

reported the cases of several who were characterized by

nephritis,

a tendency

course,

pattern frequent

ness,

and

suspected tions of

of the

GBM,

to show

that Alport

of

severe

born

infants

new may

mutants occur

in

deaf-

boys

(8).

We

these patients represented syndrome. GrUnfeld (9) with GBM changes suggestive

genetic transmission the basis of population

Kallen

disease

neurosensory

prognosis

10-yr-old girl syndrome, although she had of renal disease. Eleven years an infant girl with hematuria, developed renal failure. This

and

a progressive

occurrence

a more

no

children with a widespread family history of

(23)

example

of

nephritls dynamic

suggested

that

with

in

new mutadescribed a of Alport a negative family history later, she gave birth to and 2 yr after that, she

the

Alport

suggests occurred.

had calculations,

up

to 18%

Shaw

of all

genotype may cases of Alport

and isolated the absence

of

other

that On

affected

new-

represent

syndrome family

Patient

IV

normal

and

examination widespread Is characteristic abnormal

did not appear to have Alport syndrome of her family had nephritis. However, of her renal biopsy specimen revealed a basket-weave pattern of the GBM, which of this syndrome (8). She also showed

expression

was

identical

served In patients with The Type IV collagen

of the American

of the

to the

Type IV collagen cr5 chain, abnormal expression ob-

X-linked

Aiport

syndrome

cr5 chain-producing

Society

of Nephrology

(15).

cells

in

with

active

have cr5

a mixture chains.

which

syndrome may active abnormal X chromosome

Consequently,

such

is female Type

of normal and abnormal Our patient’s mother showed

of the we

Alport or an

on (24).

expression

therefore,

X-hinked normal

depending

inactivated

collagen

Type

IV collagen

cr5 chain,

represent a Alport syndrome. The reconfirmed this possibility.

suspected

that

this

may

mutation of X-linked sults obtained in this study Analysis of the 3’ end of her COL4A5 new

gene identified a novel single-base deletion mutation in exon 50. Gene tracking with restriction enzyme AflIII revealed that her mother was normal. The patient was a heterozygote of the mutant and wild-type alleles. We were unable to examine her father’s DNA, but his urinalysis results were normal, and It is, therefore, unlikely that he has the COL4A5 gene mutation. Mutations have been described in four patients without any family history of Alport syndrome (25-27). We identified a single-base (C; nucleotide 4728) deletion in exon 50 of Patient Y.O. This mutation, which has not been reported before, can be considered causal for the disease in this patient. This mutation alters the reading frame, introduces a translation stop codon TGA (nucleotides 4756 to 4758) after amino

acid

1585, and would be expected to result in a shortened translated sequence, leading to the formation of a Type IV collagen cr5 chain containing only 1585 amino acids instead of 1605 (Figure 5). This

would mean an NC domain the normal 229, amino acid study

Y.O. none

gene,

randomly patients

Y.O.

because

Journal

COL4A5

postulate

members.

which

female patients have either an

is

provided

with

a monoclonal

showed

abnormal

by

with

only

residues. the

209,

Support

instead of for this

immunohistochemical

antibody, Type

in which Patient collagen cr5 chain anti-Type IV collagen cr5 IV

expression. This monoclonal chain antibody was raised by immunizing rats with a peptide containing a nonconsensus amino acid sequence, VDVSDMFSKPQSE ( 1572 to 1584) (Figure 5). Our results demonstrate that a COL4A5 gene mutation

causes

gen

cr5 chain

would defects

abnormal expression of the Type IV collaprotein. This abnormally short cr5 chain be expected to cause structural and functional in the Type N collagen molecule and, there-

267

Mutation

COL4A5

fore,

In the

essential

for

helix

before

in Nonfamilial

GBM the

network. correct

formation

molecular the Type

cross-links IV collagen COL4A5 gene mutation Ding et at. (29).

Hematuria

The NC domain is probably alignment of three a chains and for the formation of inter(28). Abnormal expression of cr5 chain in a patient with a has also been reported by

Patient Y.O. showed abnormal expression of the Type IV collagen cr3 and cr4 chains. A defect ofthe Type Iv collagen cr5 chain leads to defects of the a3 and cr4 chains in the GBM. Ding et al. (29) and Antignac et al. (25) also documented abnormal expression ofthe Type IV collagen cr3 and cr4 chains in patients with COL4A5 gene mutations. The mechanism responsible for the Type IV collagen cr3 and cr4 chain defects in patients with the COL4A5 gene mutation has been discussed by Kashtan et al. (30) and Reeders (3 1), but remains to be established. Mutation in the Type IV collagen cr5 chain may result In defective molecular assembly with subsequent proteolysis of the cr3 and cr4 chains or in defective synthesis through some unknown effects on

transcription

translation (31). et a!. (32) reported mutations in the Type IV collagen cr3 and cr4 chain genes in autosomal recessive Alport syndrome. In autosomal recessive Alport syndrome, patients’ parents were Mochizuki

asymptomatic of X-linked

and their phenotype was similar to that Alport syndrome. The significant differences between autosomal recessive and X-linked Alport syndrome are the presence of consanguinity and

of disease

decade

of life

in

affected

In autosomal

females

recessive

in

Alport

the

by a grant and

for

WeLfare

Progressive project

research

first

syndrome.

Renal for

Dlsease Specially

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glomerular

basement

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Volume

6

-

Number

2

1995

#{149}