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page 1. NHSC PACS. Web Tutorial. PACS-104 http://nhsc.ipac.caltech.edu/
helpdesk. NHSC Web‐Tutorials. PACS‐104. How to access and use spec data.
NHSC PACS Web Tutorial
NHSC Web‐Tutorials PACS‐104 How to access and use spec data reduc/on scripts
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PACS-104
NHSC PACS Web Tutorial
Purpose of this tutorial The hipe distribu6on for PACS includes scripts for interac6ve data reduc6on. The collec6on of these scripts is known as the ipipe, for Interac6ve Pipeline. The standard scripts these are used for automa6c pipeline processing, but are wriDen so the they can easily be run interac6vely by stepping through line‐by‐line, or in blocks in of lines. Also included in the ipipe are special scripts, such as ChopNodInterac6ve.py, that show you the guts of your observa6on in great detail, using plots and the MaskViewer. This tutorial will show you how to find and use these scripts. - page 2
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PACS-104
Pre‐requisites:
NHSC PACS Web Tutorial
1. You should have completed the following tutorials: • PACS‐101: How to use these tutorials. • PACS‐102: Crea/ng (and Saving to a Pool) an Observa/on Context for your observa/on in your HIPE session This tutorial assumes you will have already started a HIPE session and will already have defined created an observa/onal context called “obs” which contains all of the data and ancillary files you need to begin processing your data. You will also probably have saved this context to a pool in case of some failure during the following steps. The ipipe scripts all the observa/on context you have seen from PACS‐102.
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PACS-104
NHSC PACS Web Tutorial
Step 1
Startup a new hipe session from your shell. # /bin/hipe
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PACS-104
NHSC PACS Web Tutorial
Step 2 Hipe comes with interac6ve pipeline scripts. The next slide shows how to find these scripts.
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PACS-104
NHSC PACS Web Tutorial
In this example you find the the pre‐loaded ipipe scripts you can use to reduce your data.
From the Pipeline Menu, Select PACS>Spectrometer‐ >Chopped large…‐ >StandardPipeline L05_Frames to load the Level 0 to Level 0.5 ipipe script.
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PACS-104
This should look like something like this when read in:
NHSC PACS Web Tutorial
You can step to the first line of executable code by clicking on the single arrow.
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PACS-104
You can also run more than one line of selected code.
NHSC PACS Web Tutorial
You can step through selected code executable code by clicking on the single arrow.
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PACS-104
NHSC PACS Web Tutorial
You can run the en6re file by clicking on the double arrow.
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PACS-104
What do these scripts do?
NHSC PACS Web Tutorial
There are detailed comments in each script, describing inputs and outputs. script, but for a full explana6on see the PACS Data Reduc6on Guide (PDRG) ‐> Help Menu ‐> Data Reduc6on ‐> PACS Data Reduc6on .
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NHSC PACS Web Tutorial
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NHSC PACS Web Tutorial
Step 3 Run one of the extended scripts on your own obsid. This will required changing the ipipe script. We recommend that you save the file to a new file name. Otherwise, you will replace the file in you HIPE distribu6on. Save it using File‐>Save As
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PACS-104
For example, find the Chopped lineScanExtendedSource ipipe script. Click on lineScanExtendedSource to load it.
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PACS-104
NHSC PACS Web Tutorial
Edit the file, changing the obsid.
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PACS-104
NHSC PACS Web Tutorial
Open File‐> Click on “Save As”. This will bring up a dialog box. See the next slide.
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NHSC PACS Web Tutorial
Use this dialog to changed the directory and filename.
