Cost Action FP1406 PINESTRENGTH. April 3-6 th 2017. ETSIIAA. Palencia ... Introduction to Galaxy web-based platform for bioinformatics analyses. ⢠Genome ...
Training School on Next Generation Sequencing for Fusarium circinatum Diagnostic Cost Action FP1406 PINESTRENGTH April 3-6 th 2017 ETSIIAA Palencia (Spain)
Monday 3 April 9:00-17:00. Introduction to NGS Techniques (11:00-11:30 Coffee Break; 13:00-14:30 Lunch) Trainer: Luis J. López (Biomemakers, Spain)
Next-generation sequencing platforms and technology
Next-generation sequencing data and study design for metagenomics
Metagenomes and species diversity in microbial communities
Introduction to bioinformatics analyses (e.g. preprocessing data, assembly, mapping, gene expression)
Data visualization on Genome Browsers
Tuesday 4 April 10:00-17:00 Bioinformatics analysis of NGS data - an introduction. (11:00-11:30 Coffee Break; 13:00-14:30 Lunch) Trainer: Raquel Linheiro (Catholic University of Portugal, Portugal)
Introduction to MG-RAST portal and software
Taxonomic and functional analysis using MG-RAST (Hands-on)
The goal is to execute a full analysis using MG-RAST and shotgun NGS data, including preprocessing, gene calling, clustering, protein identification, annotation mapping and abundance profiles.
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Wednesday 5 April 9:00-17:00 Sequence analysis from the host species perspective, using Galaxy bioinformatics tools (11:00-11:30 Coffee Break; 13:00-14:30 Lunch) Trainer: Michael Thon (University of Salamanca, Spain)
Introduction to Galaxy web-based platform for bioinformatics analyses
Genome and/or transcriptome assembly, annotation (species without sequenced reference genome)
Read mapping, SNP detection, identification of differential expression using RNA-seq data
Downstream analysis and data interpretation
Thursday 6 April 9:00-17:00 Small RNA Analyses for the study of Fusarium micoviruses (11:00-11:30 Coffee Break; 13:00-14:30 Lunch) Trainer: Jordán Muñoz (University of Valladolid, Spain)
Interference RNA and small RNA: concepts and cellular mechanism. Analyzing sRNA: data and preliminary results. NGS in small RNA. Other resources in sRNA. Practice
Location of the Training School: Informatic Room Campus Yutera – Green Building College of Agricultural Engineering (ETSIIAA) Palencia (Spain) Sponsors: PINESTRENGTH COST Action (FP1406) Organizers: Dr. Jorge Martín García, UVA, SP Dr. Marta Vasconcelos, UC, PT Dr. Julio Javier Diez Casero, UVA, SP
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LOGISTIC INFORMATION Venue: The Training School will be held in the Campus of the Yutera in PALENCIA, in particular, in the green Building at the College of Agricultural Engineering (ETSIIAA).
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Lodging: There is a wide variety of hotels in Palencia, although the most of them are located in the town centre. Feel free to book your accommodation according to your budget and preferences. Please, check the link to see a wide list of hotels: https://www.google.es/maps/@42.0005791,-4.5502839,13z?hl=es There is a youth hostel very close to the Campus, but far away from the town centre (http://www.juventud.jcyl.es/web/jcyl/Juventud/es/Plantilla100Detalle/1284187992963/_/12841 66995370/Albergue). The website is in Spanish, but maybe you can book there though booking, tripadvisor, etc How to arrive in Palencia from Madrid: There are many bus companies (e.g. ALSA). However, the train service is probably the best option. The ALVIA trains last ca. 1 hour and 30 minutes. http://www.renfe.com/EN/viajeros/index.html Bus service routes (within Palencia): http://www.aytopalencia.es/sites/default/files/plano_palencia_urbano_e_interurbano.pdf
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