Rock sample 90 Genbank ID Gene short description Gene ... - PLOS

Table S1. List of functional genes from Expedition 305 rock samples 90 and 142.

Rock sample 90 Genbank ID 662361 38636430 15839440 20806951 8489861 22985743 29655324 27348228 2429326 11995035 30793461 23472783 2952289 26249933 23305801 1100246 10441362 2832600 28200469 15827228 34366094 17549101 22987745 25900636 25293736 25900626 567190 12667574 7262420 7262428 34604741 FW015015B TPB16070B

Gene short description cellulase cellulase cellulase cellulase cellulase chitinase chitinase chitinase chitinase chitinase chitinase chitinase chitinase chitinase laccase laccase laccase mannanase mannanase pgl polygalacturonase polygalacturonase 0 FTHFS FTHFS FTHFS rbcS dsrA dsrA dsrA dsrA dsrB dsrB

Gene category CDEG CDEG CDEG CDEG CDEG CDEG CDEG CDEG CDEG CDEG CDEG CDEG CDEG CDEG CDEG CDEG CDEG CDEG CDEG CDEG CDEG CDEG CFIX CFIX CFIX CFIX CFIX DSR DSR DSR DSR DSR DSR

Organism Pectobacterium carotovorum Neurospora crassa Mycobacterium tuberculosis CDC1551 Thermoanaerobacter tengcongensis Thermobifida fusca Burkholderia fungorum Coxiella burnetii RSA 493 Nocardiopsis prasina Stenotrophomonas maltophilia Burkholderia cepacia Paenibacillus ehimensis Pseudomonas syringae pv. syringae B728a Stenotrophomonas maltophilia Escherichia coli CFT073 Phaeosphaeria spartinicola Trametes villosa Ganoderma lucidum Rhodothermus marinus Cellvibrio japonicus Mycobacterium leprae TN Aspergillus aculeatus Ralstonia solanacearum GMI1000 Rhodobacter sphaeroides Desulfomicrobium baculatum Streptococcus pneumoniae Desulfovibrio piger manganese-oxidizing bacterium SI85-9A1 uncultured sulfate-reducing bacterium UMTRAdsr828-17 uncultured sulfate-reducer HMS-54 uncultured sulfate-reducer HMS-24 uncultured sulfate-reducing bacterium lab clone lab clone

15077478 3095051 23102528 17937251 25027431 21233460 27468433 6466219 23055124 21230722 14331038 37222119 17937687 728691 23475584 24372200 2865531 32477238 38016798 24372984 13472464 6689526 20095139 8575576 22988087 16120989 16761960 38016657 1749680 13259303 28070885 2098698 22324411 37496853 34017074 29293188

dsrB arsenic arsenic arsenic arsenic cadmium cadmium cadmium,zinc,cobalt chromium cobalt,zinc,cadmium copper copper copper copper cytochrome cytochrome cytochrome lead lead mercury mercury mercury mercury nickel tellurium tellurium tellurium tellurium zinc,cadmium mcrA mmo mmoA pmoA pmoA pmoA nifH

DSR MET MET MET MET MET MET MET MET MET MET MET MET MET MET MET MET MET MET MET MET MET MET MET MET MET MET MET MET methane_gen methane_ox methane_ox methane_ox methane_ox methane_ox NFIX

Desulfofaba gelida Pseudomonas aeruginosa Azotobacter vinelandii Agrobacterium tumefaciens str. C58 Corynebacterium efficiens YS-314 Xanthomonas campestris pv. campestris str. ATCC 33913 Staphylococcus epidermidis ATCC 12228 Zymomonas mobilis Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 Xanthomonas campestris pv. campestris str. ATCC 33913 Pseudomonas fluorescens uncultured bacterium Agrobacterium tumefaciens str. C58 Saccharomyces cerevisiae (baker's yeast) Desulfovibrio desulfuricans G20 Shewanella oneidensis MR-1 Shewanella putrefaciens Pirellula sp. 1 Klebsiella pneumoniae Shewanella oneidensis MR-1 Mesorhizobium loti MAFF303099 Xanthomonas campestris Providencia rettgeri Wautersia eutropha Rhodobacter sphaeroides Yersinia pestis CO92 Salmonella enterica subsp. enterica serovar Typhi str. CT18 Klebsiella pneumoniae Schizosaccharomyces pombe (fission yeast) uncultured methanogen RS-ME32 Methylosinus trichosporium Methylocystis sp. M uncultured bacterium uncultured bacterium uncultured bacterium uncultured bacterium

1255456 19070843 3157506 1255484 3157528 23867892 14009569 26665349 13474124 15807979 23011399 33864494 1174887 12313640 37731823 2440024 26278794 32307919 24983618 34103538 30269589 2982930 19072877 22252874 28542639 37999158 11344610 29466004 29465998 38373187 3057083 18643736 4633572 17298107 22002454 40890245

nifH nifH nifH nifH nifH nifH amoA hao urease urease urease urease urease urease urease urease narG narG nasA nasA nasA nasA nirK nirS nirS nirS nirS norB norB nosZ nosZ nosZ nosZ 2,4-D 2,4-D acrylonitrile

NFIX NFIX NFIX NFIX NFIX NFIX NIT NIT NIT NIT NIT NIT NIT NIT NIT NIT NRED NRED NRED NRED NRED NRED NRED NRED NRED NRED NRED NRED NRED NRED NRED NRED NRED ORG ORG ORG

unidentified bacterium unidentified nitrogen-fixing bacteria unidentified nitrogen-fixing bacteria unidentified bacterium unidentified nitrogen-fixing bacteria unidentified nitrogen-fixing bacteria uncultured bacterium gp22 Nitrosospira multiformis Mesorhizobium loti MAFF303099 Deinococcus radiodurans R1 Magnetospirillum magnetotacticum Prochlorococcus marinus str. MIT 9313 Staphylococcus xylosus Rhodobacter capsulatus Nitrosomonas cryotolerans Wautersia eutropha uncultured bacterium uncultured bacterium Pseudomonas putida KT2440 Chromobacterium violaceum ATCC 12472 uncultured bacterium Aquifex aeolicus VF5 Pseudomonas mendocina uncultured bacterium uncultured bacterium uncultured bacterium Pseudomonas fluorescens uncultured bacterium uncultured bacterium uncultured bacterium Paracoccus pantotrophus Azospirillum sp. A1-3 uncultured bacterium ProR Bradyrhizobium sp. HW13 uncultured bacterium uncultured organism

27657371 18976382 22126223 23450983 23119300 3925514 2190582 23114437 30022110 33595881 218366 4126496 3172139 27817720 953231 25028858 25029448 6707658 22203519 23015058 18495817 567871 21229694 16762987 29141870 29144474 3550667 4587228 17546081 27376711 31794257 23126227 23109223 23017361 23101892 23062669

acrylonitrile aminocyclopropane atrazine benzoate-anaerobic benzoate-anaerobic benzoate-anaerobic benzoate-anaerobic benzoate-anaerobic benzoate-anaerobic benzoate-anaerobic benzoate-anaerobic benzonitrile benzonitrile biphenyl catechol catechol-ortho derivative catechol-ortho derivative catechol-ortho derivative cresol cyanuric acid cyclohexanol dibenzothiophene dichloroethane DMSO DMSO DMSO gentisate g-hexachlorocyclohexane haloacid nitrilotriacetate nitrobenzene phenylpropionate phenylpropionate phenylpropionate phenylpropionate phenylpropionate

ORG ORG ORG ORG ORG ORG ORG ORG ORG ORG ORG ORG ORG ORG ORG ORG ORG ORG ORG ORG ORG ORG ORG ORG ORG ORG ORG ORG ORG ORG ORG ORG ORG ORG ORG ORG

uncultured bacterium Dr1 Pyrococcus furiosus DSM 3638 Yersinia pestis KIM Thauera aromatica Desulfitobacterium hafniense Pseudomonas aeruginosa Rhodopseudomonas palustris CGA009 Desulfitobacterium hafniense Bacillus cereus ATCC 14579 Bordetella parapertussis 12822 Candida tropicalis Rhodococcus sp. N-771 Pseudomonas putida Wautersia oxalatica Ralstonia pickettii Corynebacterium efficiens YS-314 Corynebacterium efficiens YS-314 Thermobifida fusca Pseudomonas mendocina Magnetospirillum magnetotacticum Xanthobacter flavus Rhodococcus sp. Xanthomonas campestris pv. campestris str. ATCC 33913 Salmonella enterica subsp. enterica serovar Typhi str. CT18 Salmonella enterica subsp. enterica serovar Typhi Ty2 Salmonella enterica subsp. enterica serovar Typhi Ty2 Sphingomonas sp. RW5 Sphingomonas paucimobilis Ralstonia solanacearum GMI1000 Bradyrhizobium japonicum USDA 110 Mycobacterium bovis AF2122/97 Nostoc punctiforme Azotobacter vinelandii Magnetospirillum magnetotacticum Azotobacter vinelandii Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293

23109194 23107737 23108203 23109691 903977 22975371 14585922 22975204 7649289 19553597 39934081 33333869 17545808 32170713 38490075

phenylpropionate phenylpropionate phenylpropionate phenylpropionate phthalate protocatechuate protocatechuate protocatechuate protocatechuate protocatechuate protocatechuate pyrene salicylate salicylate vanillin

ORG ORG ORG ORG ORG ORG ORG ORG ORG ORG ORG ORG ORG ORG ORG

Azotobacter vinelandii Azotobacter vinelandii Azotobacter vinelandii Azotobacter vinelandii Burkholderia cepacia Rhodobacter sphaeroides Silicibacter pomeroyi Rhodobacter sphaeroides Sagittula stellata Corynebacterium glutamicum ATCC 13032 Rhodopseudomonas palustris CGA009 Mycobacterium sp. S65 Ralstonia solanacearum GMI1000 Streptomyces sp. WA46 Roseovarius nubinhibens

Gene short description cellulase cellulase cellulase cellulase cellulase cellulase chitinase chitinase chitinase chitinase chitinase laccase laccase laccase mannanase mannanase polygalacturonase polygalacturonase

Gene category CDEG CDEG CDEG CDEG CDEG CDEG CDEG CDEG CDEG CDEG CDEG CDEG CDEG CDEG CDEG CDEG CDEG CDEG

Organism Salmonella typhimurium LT2 Pectobacterium carotovorum Volvariella volvacea Fusarium oxysporum Streptomyces coelicolor A3(2) Clavibacter michiganensis Desulfitobacterium hafniense Chromobacterium violaceum ATCC 12472 Salinivibrio costicola Burkholderia gladioli Streptomyces coelicolor A3(2) Trametes sp. C30 Trametes villosa Pleurotus ostreatus (oyster mushroom) Cellvibrio japonicus Paecilomyces lilacinus (nematode egg-parasitic fungus) Aspergillus aculeatus Penicillium griseoroseum

Rock Sample 142

Genbank ID 16764956 662361 12584219 520821 21219953 8980306 23117984 34499695 33284730 7209516 21220964 21616730 1100246 4098195 28200469 40645341 34366094 3982838

14324459 25900628 38200102 37791343 7229168 38479625 25990790 40253034 13898437 14276799 13898429 34017156 34017094 902747 2576394 FW010103B 13249523 3095051 22958951 23473907 23054509 23102528 27314796 17530581 29840655 21244878 13898625 34496726 23012809 22986503 22975267 22981959 32039492 17548712 14331038 10047065

acsA FTHFS FTHFS rbcL rbcL rbcL dsrA dsrA dsrA dsrA dsrA dsrA dsrA dsrA dsrB dsrB dsrB arsenic arsenic arsenic arsenic arsenic arsenic arsenic cadmium cadmium cadmium chromium chromium chromium chromium chromium chromium cobalt,zinc,cadmium copper copper

CFIX CFIX CFIX CFIX CFIX CFIX DSR DSR DSR DSR DSR DSR DSR DSR DSR DSR DSR MET MET MET MET MET MET MET MET MET MET MET MET MET MET MET MET MET MET MET

Staphylococcus aureus subsp. aureus Mu50 Desulfovibrio salexigens Corynebacterium diphtheriae uncultured proteobacterium uncultured deep-sea autotrophic bacterium TAGI-2 Methylocapsa acidiphila uncultured bacterium uncultured sulfate-reducing bacterium uncultured phenanthrene mineralizing bacterium Desulfotomaculum geothermicum uncultured phenanthrene mineralizing bacterium uncultured bacterium uncultured bacterium Desulfovibrio vulgaris Allochromatium vinosum lab clone uncultured sulfate-reducing bacterium Pseudomonas aeruginosa Rhodobacter sphaeroides Desulfovibrio desulfuricans G20 Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 Azotobacter vinelandii Staphylococcus epidermidis ATCC 12228 IncN plasmid R46 Chlamydophila caviae GPIC Xanthomonas axonopodis pv. citri str. 306 Pseudomonas putida Chromobacterium violaceum ATCC 12472 Magnetospirillum magnetotacticum Rhodobacter sphaeroides Rhodobacter sphaeroides Rhodobacter sphaeroides Pseudomonas aeruginosa UCBPP-PA14 Ralstonia solanacearum GMI1000 Pseudomonas fluorescens Wautersia metallidurans

10047068 10047069 17548879 17937687 21225358 39996164 39934990 24372200 39933281 39996386 20258071 39998003 18076024 24411186 23821233 24372984 18076026 6689528 4572426 15920013 17549265 28870264 17225098 19554054 34498563 32474566 22988087 22979636 23000799 28868161 21222139 38016653 23057746 4126672 1749680 126867

copper copper copper copper copper cytochrome cytochrome cytochrome cytochrome cytochrome cytochrome cytochrome mercury mercury mercury mercury mercury mercury mercury mercury nickel nickel nickel,cobalt tellurium tellurium tellurium tellurium tellurium tellurium tellurium tellurium tellurium tellurium zinc zinc,cadmium mcr

MET MET MET MET MET MET MET MET MET MET MET MET MET MET MET MET MET MET MET MET MET MET MET MET MET MET MET MET MET MET MET MET MET MET MET methane_gen

Wautersia metallidurans Wautersia metallidurans Ralstonia solanacearum GMI1000 Agrobacterium tumefaciens str. C58 Streptomyces coelicolor A3(2) Geobacter sulfurreducens PCA Rhodopseudomonas palustris CGA009 Shewanella oneidensis MR-1 Rhodopseudomonas palustris CGA009 Geobacter sulfurreducens PCA Rhodopseudomonas palustris Geobacter sulfurreducens PCA Pseudomonas sp. Acinetobacter sp. ED23-35 Pseudomonas putida Shewanella oneidensis MR-1 Pseudomonas sp. Xanthomonas campestris Sphingomonas paucimobilis Plasmid pSB102 Ralstonia solanacearum GMI1000 Pseudomonas syringae pv. tomato str. DC3000 Hafnia alvei Corynebacterium glutamicum ATCC 13032 Chromobacterium violaceum ATCC 12472 Pirellula sp. 1 Rhodobacter sphaeroides Rhodobacter sphaeroides Xylella fastidiosa Ann-1 Pseudomonas syringae pv. tomato str. DC3000 Streptomyces coelicolor A3(2) Klebsiella pneumoniae Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 Staphylococcus aureus Schizosaccharomyces pombe (fission yeast) Methanothermobacter marburgensis str. Marburg

34305102 6002402 2098700 6424923 7188931 4105847 10863141 20278769 20090488 20804123 6523533 23058236 15616504 5881154 15966216 13474124 32033449 23011399 14024887 19070378 38605266 21219745 13474125 37526091 29610775 38605398 14024877 23005331 17982573 37731823 17740883 34496646 2440024 12007388 14348604 38427022

mcrA mmo mmo pmoA pmoA pmoA nifH nifH nifH nifH nifH 0 gdh urease urease urease urease urease urease urease urease urease urease urease urease urease urease urease urease urease urease urease urease narB narG narG

methane_gen methane_ox methane_ox methane_ox methane_ox methane_ox NFIX NFIX NFIX NFIX NFIX NIT NIT NIT NIT NIT NIT NIT NIT NIT NIT NIT NIT NIT NIT NIT NIT NIT NIT NIT NIT NIT NIT NRED NRED NRED

uncultured archaeon Methylomonas sp. KSPIII Methylocystis sp. M uncultured eubacterium pAMC512 Methylosinus trichosporium thermophilic methanotroph HB marine stromatolite eubacterium HB(0697) A100 uncultured nitrogen-fixing bacterium Methanosarcina acetivorans C2A Mesorhizobium loti uncultured microorganism SN-12 Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 Bacillus halodurans C-125 Sporosarcina pasteurii Sinorhizobium meliloti 1021 Mesorhizobium loti MAFF303099 Actinobacillus pleuropneumoniae serovar 1 str. 4074 Magnetospirillum magnetotacticum Mesorhizobium loti Rhizobium leguminosarum bv. viciae Bradyrhizobium japonicum Streptomyces coelicolor A3(2) Mesorhizobium loti MAFF303099 Photorhabdus luminescens subsp. laumondii TTO1 Streptomyces avermitilis MA-4680 Ralstonia solanacearum Mesorhizobium loti Magnetospirillum magnetotacticum Brucella melitensis 16M Nitrosomonas cryotolerans Agrobacterium tumefaciens str. C58 Chromobacterium violaceum ATCC 12472 Wautersia eutropha Synechococcus sp. WH 7803 Paracoccus pantotrophus uncultured bacterium

26278684 26278882 29652432 26278876 24983618 16120504 12597209 27125563 3758830 37999162 24421427 29466092 3057083 5688873 39935218 9820076 3063589 24575091 40890131 40890225 40890327 40890319 40890261 40890297 27657375 18976382 1841362 7542440 14289342 25990733 14289340 31407696 7542439 18369658 15836922 13473296

narG narG narG narG nasA nirB nirK nirK nirK nirS nirS norB nosZ 2,4,5-T 2,4,5-T 3-chlorobenzoate acetylene acetylene acrylonitrile acrylonitrile acrylonitrile acrylonitrile acrylonitrile acrylonitrile acrylonitrile aminocyclopropane aniline benzoate-aerobic benzoate-aerobic benzoate-aerobic benzoate-aerobic benzoate-aerobic benzoate-aerobic benzoate-anaerobic benzoate-anaerobic benzoate-anaerobic

NRED NRED NRED NRED NRED NRED NRED NRED NRED NRED NRED NRED NRED ORG ORG ORG ORG ORG ORG ORG ORG ORG ORG ORG ORG ORG ORG ORG ORG ORG ORG ORG ORG ORG ORG ORG

uncultured bacterium uncultured bacterium uncultured bacterium uncultured bacterium Pseudomonas putida KT2440 Yersinia pestis CO92 Alcaligenes sp. STC1 uncultured bacterium Hyphomicrobium zavarzinii uncultured bacterium uncultured organism uncultured bacterium Paracoccus pantotrophus Arthrobacter sp. Rhodopseudomonas palustris CGA009 Comamonas testosteroni Synechococcus sp. PCC 7002 Streptomyces globisporus uncultured organism uncultured organism uncultured organism uncultured organism uncultured organism uncultured organism uncultured bacterium BD1 Pyrococcus furiosus DSM 3638 Pseudomonas putida Pseudomonas putida Rhodococcus sp. 19070 Streptomyces setonii Rhodococcus sp. 19070 Acinetobacter calcoaceticus Pseudomonas putida Azoarcus evansii Xylella fastidiosa 9a5c Mesorhizobium loti MAFF303099

33603723 33595881 218366 2190579 33597722 1877504 391834 28193603 27228520 3243172 6048992 3402316 3402328 4579698 23094407 3025224 17936409 23124219 24985882 27228503 38638066 5305775 12003192 23060646 22995618 23102161 13488245 17937156 40316488 15625037 26986209 16759573 29141870 29142390 30268636 3550667

benzoate-anaerobic benzoate-anaerobic benzoate-anaerobic benzoate-anaerobic benzoate-anaerobic benzonitrile biphenyl biphenyl carbazole carbazole catechol catechol catechol catechol catechol-ortho derivative catechol-ortho derivative catechol-ortho derivative catechol-ortho derivative catechol-ortho derivative catechol-ortho derivative catechol-ortho derivative catechol-ortho derivative chlorophenol cyanuric acid cyanuric acid cyanuric acid dibenzothiophene dibenzothiophene dibenzothiophene dibenzothiophene dibenzothiophene DMSO DMSO DMSO fluorene gentisate


Bordetella bronchiseptica RB50 Bordetella parapertussis 12822 Candida tropicalis Rhodopseudomonas palustris CGA009 Bordetella parapertussis 12822 Pseudomonas putida Pseudomonas sp. Ralstonia sp. SBUG 290 Pseudomonas resinovorans Sphingomonas sp. CB3 Burkholderia sp. RP007 unidentified bacterium unidentified bacterium Frateuria sp. ANA-18 Rhodococcus opacus Methylobacterium extorquens Agrobacterium tumefaciens str. C58 Nostoc punctiforme Pseudomonas putida KT2440 Pseudomonas resinovorans Wautersia eutropha Mycobacterium smegmatis Desulfitobacterium chlororespirans Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 Xylella fastidiosa Dixon Azotobacter vinelandii Mesorhizobium loti MAFF303099 Agrobacterium tumefaciens str. C58 Bacillus subtilis Rhodovulum sulfidophilum Paracoccus versutus Salmonella enterica subsp. enterica serovar Typhi str. CT18 Salmonella enterica subsp. enterica serovar Typhi Ty2 Salmonella enterica subsp. enterica serovar Typhi Ty2 Terrabacter sp. DBF63 Sphingomonas sp. RW5

32037450 4521186 27375220 17549466 15420769 17544992 9957198 16804381 17937158 6014660 3115396 16604298 3820513 37519361 7619821 31407691 5851788 14276040 32967108 17826940 23059516 23109223 23468765 23101892 23106474 23109194 22983104 30063928 22987953 903977 4128218 29828245 14585922 22975204 17546160 14585964

gentisate g-hexachlorocyclohexane homogentisate-derivative hydroxyacetophenone MTBE naphthalene nitrilotriacetate nitrilotriacetate nitrilotriacetate nitrobenzoate pentachlorophenol pentachlorophenol phenanthrene phenanthrene phenanthrene phenol-aerobic phenol-aerobic phenol-aerobic phenol-aerobic phenol-aerobic phenylpropionate phenylpropionate phenylpropionate phenylpropionate phenylpropionate phenylpropionate phenylpropionate phenylpropionate phenylpropionate phthalate phthalate protocatechuate protocatechuate protocatechuate protocatechuate protocatechuate


Pseudomonas aeruginosa UCBPP-PA14 Sphingomonas paucimobilis Bradyrhizobium japonicum USDA 110 Ralstonia solanacearum GMI1000 Rhodococcus sp. Q15 Ralstonia solanacearum GMI1000 EDTA-degrading bacterium BNC1 Listeria monocytogenes EGD-e Agrobacterium tumefaciens str. C58 Ralstonia pickettii Sphingomonas sp. UG30 Sphingomonas sp. UG30 Burkholderia sp. RP007 Pseudomonas fluorescens Nocardioides sp. KP7 Acinetobacter calcoaceticus Ralstonia sp. KN1 uncultured microorganism PCRHD10 Pseudomonas sp. KL28 Burkholderia kururiensis Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 Azotobacter vinelandii Pseudomonas syringae pv. syringae B728a Azotobacter vinelandii Azotobacter vinelandii Azotobacter vinelandii Rhodobacter sphaeroides Shigella flexneri 2a str. 2457T Rhodobacter sphaeroides Burkholderia cepacia Burkholderia cepacia Streptomyces avermitilis MA-4680 Silicibacter pomeroyi Rhodobacter sphaeroides Ralstonia solanacearum GMI1000 marine bacterium SE96

21230278 22978566 33333869 17545808 10957461 39935184 20137979 2498273 22002034 151593 22203518 4929532 17221316 17548444 17988985 40788119 22127923

protocatechuate protocatechuate pyrene salicylate salicylate thiocyanate thiocyanate thiocyanate thiocyanate toluene-aerobic toluene-aerobic toluene-aerobic toluene-anaerobic vanillin vanillin vanillin xylene

ORG ORG ORG ORG ORG ORG ORG ORG ORG ORG ORG ORG ORG ORG ORG ORG ORG

Xanthomonas campestris pv. campestris str. ATCC 33913 Rhodobacter sphaeroides Mycobacterium sp. S65 Ralstonia solanacearum GMI1000 Deinococcus radiodurans R1 Rhodopseudomonas palustris CGA009 Pseudomonas aeruginosa Synechocystis sp. PCC 6803 Oligotropha carboxidovorans Pseudomonas mendocina Pseudomonas mendocina Acinetobacter sp. ADP1 Thauera aromatica Ralstonia solanacearum GMI1000 Brucella melitensis 16M Pseudomonas fluorescens Yersinia pestis KIM