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Comment

Nucleic acids research. 2016;44(D1):D1202-13. Epub 2015/09/25. doi: 10.1093/nar/gkv951. PubMed PMID: 26400175; PubMed Central PMCID: PMC4702940.

S1 Table. List of resources and type of information collected in the graph database. Database

Entity type

Relationship type

PubChem compounds [1]

Compound

-

UniProt [2]

Protein

-

March 2016

ENSEMBL [3]

Gene

Conversion

GRCh38.p5

Compound,

Annotation, Biochemical

78.0

Pathway

reaction, Catalysis

miRTarBase

MicroRNA

Control

6.1

BioGRID

-

Genetic association,

3.4.134

Pathway Commons

-

KEGG

Version March 2016 (Chemical and drugs category)

Molecular binding Control

7.0

References 1. Kim S, Thiessen PA, Bolton EE, Chen J, Fu G, Gindulyte A, et al. PubChem Substance and Compound databases. Nucleic acids research. 2016;44(D1):D1202-13. Epub 2015/09/25. doi: 10.1093/nar/gkv951. PubMed PMID: 26400175; PubMed Central PMCID: PMC4702940. 2. UniProt C. UniProt: a hub for protein information. Nucleic acids research. 2015;43(Database issue):D204-12. Epub 2014/10/29. doi: 10.1093/nar/gku989. PubMed PMID: 25348405; PubMed Central PMCID: PMC4384041. 3. Cunningham F, Amode MR, Barrell D, Beal K, Billis K, Brent S, et al. Ensembl 2015. Nucleic acids research. 2015;43(Database issue):D662-9. Epub 2014/10/30. doi: 10.1093/nar/gku1010. PubMed PMID: 25352552; PubMed Central PMCID: PMC4383879.