Suppdata: Downloading Supplementary Data from ... - Open Journals
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Suppdata: Downloading Supplementary Data from ... - Open Journals
May 1, 2018 - Orme, David, Rob Freckleton, Gavin Thomas, Thomas Petzoldt, Susanne Fritz, Nick. Isaac, and William D Pearse. 2013. Caper: Comparative ...
Suppdata: Downloading Supplementary Data from Published Manuscripts William D Pearse1 and Scott A Chamberlain2 DOI: 10.21105/joss.00721
1 Department of Biology & Ecology Center, Utah State University, Logan, Utah, USA 2 rOpenSci
Software • Review • Repository • Archive Submitted: 01 May 2018 Published: 03 May 2018 Licence Authors of papers retain copyright and release the work under a Creative Commons Attribution 4.0 International License (CC-BY).
Summary suppdata is an R (R Core Team 2018) package to provide easy, reproducible access to supplemental materials within R. Thus suppdata facilitates open, reproducible research workflows: scientists re-analyzing published datasets can work with them as easily as if they were stored on their own computer, and others can track their analysis workflow painlessly. For example, imagine you were conducting an analysis of the evolution of body mass in mammals. Without suppdata, such an analysis would require manually downloading body mass and phylogenetic data from published manuscripts. This is time-consuming, difficult (if not impossible) to make truly reproducible without re-distributing the data, and hard to follow. With suppdata, such an analysis is straightforward, reproducible, and the sources of the data (S. A. Fritz, Bininda-Emonds, and Purvis 2009, Jones et al. (2009)) are clear because their DOIs are embedded within the code: # Load phylogenetics packages library(ape) library(caper) library(phytools) # Load suppdata library(suppdata) # Load two published datasets tree
