Supplementary Figure 2 - Nucleotide alignment of R. philippinarum F-ORF. f16_F-ORF ATG TTA ATG TTT CTT ACC TTT TTA ATT AGT TTT TTT ATT GCT TTA GTA TAT TTA GAT TTA GGT CTT ATT TAT AGT TAT TTA GGA AAA GAG TAT TCT TGG
Supplementary Figure 5 - LURs conserved motifs LOGOs. LOGOs of motifs found with MEME. Letters dimensions are proportional to nucleotide frequency at the given position. (a) Motif δ (all species)
T
TC C 40
39
AA
38
37
A
36
35
33
32
31
A
34
T
G
29
28
26
25
24
27
C
AA
C A
CCT
C
T AC A G TCCT CATT
C
G
30
C GAGA
T GT
23
T
22
T GA 21
20
19
18
17
16
15
14
13
12
G
11
9
A G GTCGCC
AT G A
G 10
8
7
GT 6
5
4
A 3
G
2
0
TG 1
bits
1
C AA A G G G G GGGGGG A GGGTAGGTATTAGAAATTTTTGGTG G AATATC TCT AT GCGGTTATAATTT C
