Supplementary Materials: Spatial Temporal Dynamics and ... - MDPI

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PHL/2004/Z-04-522 Philippines. PH. Dog ... PHL/2005/Z-05-396 Philippines. PH. Dog ... 2011. GU647092. JX08-45. China. CN. Ferret Badger. 2008. FJ719752.
Int. J. Mol. Sci. 2016, 17, 392; doi:10.3390/ijms17030392

S1 of S4

Supplementary Materials: Spatial Temporal Dynamics and Molecular Evolution of Re-Emerge Rabies Virus in Taiwan Yung-Cheng Lin, Pei-Yu Chu, Mei-Yin Chang, Kuang-Liang Hsiao, Jih-Hui Lin and Hsin-Fu Liu Table S1. The list of references strains used to phylogenetic and evolutionary analysis in this study. Accession AB683584 AB563813 AB563901 EU086155 AB563800 AB563975 AB733962 AB564005 AB563896 AB564016 AB563807 FJ959397 DQ767896 JQ699272 EU267747 GU358653 EU828654 EU643590 JN936788 FJ712196 GQ857468 FJ719756 JQ946087 GU647092 FJ719752 JQ950453 FJ719749 JQ950451 EU086129 AY257983 DQ849069 AB052666 DQ849072 EU086151 AB115921 EU267744 EU267751 EU275240 GQ857464 EU267759 GQ857461 EU267753 GQ857471 EU267769 JQ647510 EF643518 EU267762 EU267763 GU233763 FJ825132 FJ825133

Isolate RV/NCR.PHL/2004/Z-04-522 RV/NCR.PHL/2005/Z-05-396 RV/R3.PHL/2008/TRa-086 04030PHI RV/NCR.PHL/2005/Z-05-009 RV/CAR.PHL/2009/TRa-200 RV/CAR.PHL/2010/TRa-289 RV/R7.PHL/2009/TRa-239 RV/R7.PHL/2008/TRa-080 RV/R10.PHL/2009/TRa-252 RV/R11.PHL/2005/Z-05-186 CTN-1 CTN CGX0810D Guizhou Al03 GX4 GN07 HN10 CZJ0803F F04 08ZL11 ZJ-LA JX08-45CC JX08-45 JX08-48 JX12-234 JX08-47 JX12-102 9913BIR HM208 N11 No.33 CQ92 03003INDO SN01-23 Guangxi_YL66 Guizhou Qx5 Yunnan_Qj07 09AF33 Henan Sq59 09AF30 Henan Hb10 WJ HunanXx33 WH11 Hubei/Wuhan/070308 Hunan DK13 Hunan Wg12 JX09-17(fb) D11 F01

Rabies Virus Glycoprotein Gene Country Country Code Philippines PH Philippines PH Philippines PH Philippines PH Philippines PH Philippines PH Philippines PH Philippines PH Philippines PH Philippines PH Philippines PH China CN China CN China CN China CN China CN China CN China CN China CN China CN China CN China CN China CN China CN China CN China CN China CN China CN Myanmar MM Thailand TH China CN Thailand TH China CN Indonesia ID Indonesia ID China CN China CN China CN China CN China CN China CN China CN China CN China CN China CN China CN China CN China CN China CN China CN China CN

Host Species Dog Dog Dog Human Dog Dog Dog Dog Dog Dog Dog Vaccine Dog Dog Dog Dog Dog Human Ferret Badger Ferret Badger Ferret Badger Ferret Badger Ferret Badger Ferret Badger Ferret Badger Ferret Badger Ferret Badger Ferret Badger Dog Human Dog Dog Dog Dog Dog Dog Dog Dog Dog Dog Dog Dog Dog Dog Donkey Buffalo Dog Dog Ferret Badger Dog Ferret Badger

Year 2004 2005 2008 2004 2005 2009 2010 2009 2008 2009 2005 1956 1957 2008 2004 1994 2007 2006 2008 2008 2008 2008 2011 2008 2008 2012 2008 2012 1999 2001 1997 2000 1992 2003 2001 2003 2004 2007 2009 2004 2009 2004 1989 2004 2011 2007 2004 2004 2009 2008 2008

Int. J. Mol. Sci. 2016, 17, 392 GQ857465 FJ712194 GQ857466 FJ825131 GQ857470 EU267773 EU267752 JQ423952 EU549783 DQ076097 GU937024 DQ076102 FJ415313 EF437215 KC737850 AB276311 AB276308 AB085828 DQ875050 AB128149 M13215 EF206707 M31046 EU267745 AF499686 JQ685957 JQ685922 AY705373 JQ685950 JQ685953 AB276315 KF501174 KF501175 KF501176 KF501177 KF501178 KF501179 N/A KP881359 KP881360 KP881357

ZJCA1 D02 08ZL01 D10 LH Jiangsu Wx1 Hebi0(H) BJ2011E BD06 SKRBV0404HC KRVR0906 SKRRD9902PJ NeiMeng925 NNV-RAB-H A11-5300 BRhm528 BRdg101 HEP-Flury MRV Ni-CE PV ERV SAD B19 Guizhou Al0(H) SRV9 OR8767 TN186 SHBRV-18 A093504 3645DR BRhm671 TW-1614 TW-1680 TW-1682 TW-1683 TW-1685 TW-1694 TW-1706 TW-1907 TW-1944 TW-1955

Accession HM486368 DQ666290 DQ866121 EU159398 EU086182 EU159386 DQ866105 DQ866116 DQ866120 EU643590 EU828653 FJ712196 FJ598135 JQ946087 FJ719753 GU647092 FJ719751 JQ950452 JQ950448 FJ959397

Isolate CGZ0508D Guizhou_A103 GXWXp nu 02046CHI GX4 GX01 GXLA GXSL HN10 GN07 F04 ZJ-LA JX08-45CC Jx08-48 JX08-45 Jx08-47 Jx12-234 JX12-67 CTN-1

S2 of S4 China CN China CN China CN China CN China CN China CN China CN China CN China CN Korea KR Korea KR Korea KR China CN India IN USA US Brazil BR Brazil BR Japan JP China CN Japan JP France FR USA US USA US China CN China CN USA US USA US USA US USA US Mexico MX Brazil BR Taiwan TW Taiwan TW Taiwan TW Taiwan TW Taiwan TW Taiwan TW Taiwan TW Taiwan TW Taiwan TW Taiwan TW Rabies Virus Nucleoprotein Gene Country Country Code China CN China CN China CN China CN China CN China CN China CN China CN China CN China CN China CN China CN China CN China CN China CN China CN China CN China CN China CN China CN

Dog Dog Dog Dog Dog Dog Human Equine Dog Cattle Raccoon dog Raccoon dog Raccoon dog Human Human Human Dog Vaccine Rat Vaccine Vaccine Vaccine Vaccine Human Vaccine Gray fox Bat Bat Bat Human Human Formosan Ferret Badger Formosan Ferret Badger Formosan Ferret Badger Formosan Ferret Badger Formosan Ferret Badger Formosan Ferret Badger Formosan Ferret Badger Formosan Ferret Badger Formosan Ferret Badger Formosan Ferret Badger

2009 2008 2008 2008 2006 2004 2007 2011 2008 2004 2009 1999 2008 2006 2011 1997 2001 2003 1987 2007 1993 1978 1990 2004 2006 2009 2005 1996 2009 2009 2005 2013 2013 2013 2013 2013 2013 2013 2013 2013 2013

Host Species Dog Dog Dog Human Dog Dog Dog Dog Dog Human Dog Ferret Badger Ferret Badger Ferret Badger Ferret Badger Ferret Badger Ferret Badger Ferret Badger Ferret Badger Vaccine

Year 2005 2004 2006 1986 1994 1994 2006 2003 2004 2006 2007 2008 2008 2011 2008 2008 2008 2012 2012 1956

Int. J. Mol. Sci. 2016, 17, 392 HM486380 DQ787145 EU086205 AY103004 EU275243 FJ594278 JN786877 EU086206 EU086171 EU086209 EU086210 EU086192 EU275245 EU159401 HQ118110 JQ647510 EF611081 GU233765 EU828657 EU549783 EU828655 EU267777 EF556197 JQ685957 GU644982 AY705373 JQ685950 AF351849 JQ685953 KC758862 AY877435 GU937036 DQ076130 DQ076124 EF437215 AY352493 L20672 AY352486 AY352462 EU853594 AY854593 AB128149 AB044824 EF206715 AF499686 EF206707 AF357308 AB085828 DQ875050 KF501180 KF501181 KF501182 KF501183 KF501184 KF501185 N/A KP881356

CSD0614D CTN 04030PHI 94273PHI Yunnan_Tc06 N11 QS-05 8734THA 9916CBG 01016VNM 01017VNM 03003INDO Yunnan_Qj07 WJ ZJD8 WH11 hubei070308 JX09-17-FB WJ07-1 BD06 GC07 Hebei0(H) Zhejiang Wz0(H) OR8767 TN186 SHBRV-18 A093504 STTEX 3645DR ARGA795_2007 V920 KRVR0901 SKRBV0404HC SKRDG0203CW NNV-RAB-H RV61 Ontario 3510w RVHK Guinea V684 Ni-CE Nishigahara SAD P5/88(Rabifox)

Accession GU358653 GQ472533 GQ472507 EU643590

Isolate GX4 GXWX GX01 HN10

ERA PV HPE-Flury MRV TW-1614 TW-1680 TW-1682 TW-1683 TW-1685 TW-1694 TW-1749 TW-1944

S3 of S4 China CN China CN Philippines PH Philippines PH China CN China CN Thailand TH Thailand TH Cambodia KH Viet Nam VN Viet Nam VN Indonesia ID China CN China CN China CN China CN China CN China CN China CN China CN China CN China CN China CN USA US USA US USA US USA US USA US Mexico MX USA US Mexico MX Korea KR Korea KR Korea KR India IN India IN Canada CA Russian RU Russian RU Guinea GN Mexico MX Japan JP Japan JP USA US USA US France FR France FR Japan JP China CN Taiwan TW Taiwan TW Taiwan TW Taiwan TW Taiwan TW Taiwan TW Taiwan TW Taiwan TW Rabies Virus Matrix Protein Gene Country Country Code China CN China CN China CN China CN

Dog Vaccine Dog Human Dog Dog Dog Human Dog Dog Dog Dog Dog Dog Dog Donkey Buffalo Ferret Badger Dog Dog Dog Human Human Gray fox Bat Bat Bat Bat Human Bat Bat Raccoon dog Cattle Dog Human Human Ontario fox Wolf Human Dog skunk Vaccine Vaccine Vaccine Vaccine Vaccine Vaccine Vaccine Rat Formosan Ferret Badger Formosan Ferret Badger Formosan Ferret Badger Formosan Ferret Badger Formosan Ferret Badger Formosan Ferret Badger Formosan Ferret Badger Formosan Ferret Badger Host Species Dog Pig Dog Human

Year 1994 2005 2004 2006

2006 1957 2004 1994 2006 1997 2012 1983 1999 2001 2001 2003 2007 1989 2008 2011 2007 2009 2007 2008 2007 2007 2006 2009 2005 1996 2009 1994 2009 2007 1993 2009 2004 2002 2006 1987 1996 1995 1998 1993 1992 2007 2000 2001 2006 1978 1993 2003 1987 2013 2013 2013 2013 2013 2013 2013 2013

Int. J. Mol. Sci. 2016, 17, 392 FJ959397 FJ712195 FJ719757 FJ719754 GU647092 JQ946087 FJ719750 JQ647510 GU233764 FJ719759 EU549783 FJ032326 EU293100 EU293107 JN786877 AB699220 KF154996 EF437215 KC171644 KC171645 AB291107 AB085828 DQ875050 JQ977406 EU307994 EF206707 EF206715 FJ032330 AB128149 AB044824 AF360857 JQ685953 JQ685957 JQ685950 JQ685922 KF544960 KF544961 KF544962 KF544963 KF544964 KF544965 N/A N/A N/A N/A

CTN-1 F02 ZJ-LA JX08-58 JX08-45 JX08-45CC JX08-47 WH11 JX09-17(fb) ZJ-QZ BD06 D02 8764THA 8743THA QS-05 BDR5 RV61 NNV-RAB-H BD0406CC BV9901PJ BR-Pfx6 HPE-Flury MRV 1352KRA CVS ERA SAD P5/88 (Rabifox) F01 Ni-CE Nishigahara NYRAC; NY516 3645DR OR8767 A093504 TN186 TW-1614 TW-1680 TW-1682 TW-1683 TW-1685 TW-1694 TW-1706 TW-1749 TW-1879 TW-1944

S4 of S4 China China China China China China China China China China China China Thailand Thailand Thailand Bangladesh India India Korea Korea Brazil Japan China Russian India France USA China Japan Japan USA Mexico USA USA USA Taiwan Taiwan Taiwan Taiwan Taiwan Taiwan Taiwan Taiwan Taiwan Taiwan

CN CN CN CN CN CN CN CN CN CN CN CN TH TH TH BD IN IN KR KR BR JP CN RU IN FR US CN JP JP US MX US US US TW TW TW TW TW TW TW TW TW TW

Vaccine Ferret Badger Ferret Badger Ferret Badger Ferret Badger Ferret Badger Ferret Badger Donkey Ferret Badger Dog Dog Dog Human Human Dog Goat Human Human Raccoon dog Raccoon dog Gray fox Vaccine Rat Dog Dog Vaccine Vaccine Ferret Badger Vaccine Vaccine Procyon lotor Human Gray Fox Bat Bat Formosan Ferret Badger Formosan Ferret Badger Formosan Ferret Badger Formosan Ferret Badger Formosan Ferret Badger Formosan Ferret Badger Formosan Ferret Badger Formosan Ferret Badger Formosan Ferret Badger Formosan Ferret Badger

1956 2008 2008 2008 2008 2011 2008 2011 2009 2008 2008 2008 1983 1983 2012 2010 1987 2006 2004 1999 2002 2003 1987 2008 1988 1978 2001 2008 2007 2000 1997 2009 2009 2009 2005 2013 2013 2013 2013 2013 2013 2013 2013 2013 2013

Abbreviations: BD: Bangladesh; BR: Brazil; CA: Canada; CN: China; FR: France; GN: Guinea; ID: Indonesia; IN: India; JP: Japan; KH: Cambodia; KR: Korea; MM: Myanmar; MX: Mexico; PH: Philippines; RU: Russian; TH: Thailand; TW: Taiwan; US: United States of America (USA); VN: Viet Nam.