HWE rs11206510. 1. 55,268,627. C/T. C. 0.16. A/G. G. 0.19 0.987 0.438 rs17114036. 1. 56,735,409. A/G. G. 0.11. A/G. G. 0.11 0.924 0.229 rs599839. 1.
Supplementary Table S1. SNPs with confirmed associations with CHD used in risk prediction models SNP rs11206510 rs17114036 rs599839 rs17011666 rs17465637 rs6725887 rs2306374 rs1332844 rs12190287 rs3798220 rs11556924 rs1333049 rs579459 rs2505083 rs1746048 rs12413409 rs974819 rs3184504 rs4773144 rs2895811 rs3825807 rs4380028 rs12936587 rs1122608 rs2228671 rs9982601 rs7278204
Chr 1 1 1 1 1 2 3 6 6 6 7 9 9 10 10 10 11 12 13 14 15 15 17 19 19 21 21
Position (b37) 55,268,627 56,735,409 109,623,689 220,865,588 220,890,152 203,454,130 139,602,642 12,996,990 134,256,218 160,881,127 129,450,732 22,115,503 135,143,989 30,375,128 44,095,830 104,709,086 103,165,777 110,368,991 109,758,713 99,203,695 76,876,166 76,898,148 17,484,447 11,024,601 11,071,912 34,520,998 34,543,235
HapMap (CEU) Minor Alleles MAF allele C/T C 0.16 A/G G 0.11 A/G G 0.28 A/G G 0.17 A/C A 0.27 C/T C 0.16 C/T C 0.18 C/T C 0.39 C/G G 0.40 C/T C 0.00 C/T T 0.39 C/G C 0.46 C/T C 0.20 C/T C 0.43 C/T T 0.15 A/G A 0.08 C/T T 0.22 C/T T 0.45 A/G G 0.42 C/T C 0.42 A/G G 0.45 C/T T 0.41 A/G G 0.47 G/T T 0.26 C/T T 0.11 C/T T 0.21 A/G G 0.17
Alleles A/G A/G A/G A/G A/C A/G A/G A/G C/G A/G A/G C/G A/G A/G A/G A/G A/G A/G A/G A/G A/G A/G A/G A/C A/G A/G A/G
EAS (Metabochip) Minor Call MAF allele rate G 0.19 0.987 G 0.11 0.924 G 0.24 0.968 G 0.21 0.992 A 0.29 0.995 G 0.11 0.995 G 0.15 0.988 G 0.36 0.992 C 0.38 0.990 G 0.03 0.995 A 0.39 0.994 G 0.46 0.994 G 0.19 0.988 G 0.42 0.988 A 0.14 0.997 A 0.07 0.987 A 0.32 0.993 A 0.48 0.984 G 0.47 0.855 G 0.41 0.994 G 0.49 0.883 A 0.42 0.994 A 0.46 0.991 A 0.24 0.977 A 0.12 0.988 A 0.14 0.956 G 0.15 0.991
HWE 0.438 0.229 0.642 0.196 0.403 0.861 0.916 0.452 0.956 0.933 0.937 0.790 0.303 0.471 0.739 0.617 0.436 0.615
