Table S1 Oligonucleotide primers used in sample preparation for ...

Table S1 Oligonucleotide primers used in sample preparation for Illumina sequencing. Primer Name Primer Source PE Adapter Illumina^ Illumina^ Multiplexing Index Read Primer Adapter-i5 Illumina^ barcode ILL-PCR Illumina^ Primer ILL-PCR Illumina^ Primer Adapter-i7 Modified from barcode Illumina^ CA1-TS-YY * CA1-20TVN *

Primer sequence (5’ to 3’) ACACTCTTTCCCTACACGACGCTCTTCCGATCT GATCGGAAGAGCACACGTCTGAACTCCAGTCA

AATGATACGGCGACCACCGAGATCTACAC[xxxxx] ACTCTTTCCCTACACGACGCTCTTCCGATCT AATGATACGGCGACCACCGA CAAGCAGAAGACGGCATACGA

CAAGCAGAAGACGGCATACGAGAT[xxxxxx]GTGA CTGGAGTTCAGACGTGTGCTCTTCCGATCT AGCAGTGGTATCAACGCAGAGTACYYGGG AAGCAGTGGTATCAACGCAGAGTACTTTTTTTTTT TTTTTTTTTTVN CA1* AAGCAGTGGTATCAACGCAGAGTAC ^ Oligonucleotide sequences © 2007-2012 Illumina, Inc. All rights reserved, derivative works created by Illumina customers are authorized for use with Illumina instruments and products only. All other uses are strictly prohibited. * Modified from TaKaRa Clontech Smart cDNA Synthesis Kit

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S. A. Kitchen et al.