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Table S1. Quality control of participant data. 723638 SNPs - PLOS
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Table S1. Quality control of participant data. 723638 SNPs - PLOS
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Number
dropped
during exclusion step: Non-polymorphic in cases & controls. 96,955 SNPs. Overall
call rate
< 95%. 27,779 SNPs. Overall MAF < 5% & total
call
...
Table S1. Quality control of participant data. Number at start of QC
906,545 SNPs
Number dropped during exclusion step:
Non-polymorphic in cases & controls
96,955 SNPs
Overall call rate < 95%
27,779 SNPs
Overall MAF < 5% & total call rate < 99%
30,080 SNPs
SNPs with HWE for controls (p< 10-7) & no non28,093 SNPs polymorphic in controls
Number at end of QC
723,638 SNPs
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