Top 10% Top 5% Top 10% Top 5% - PLOS

20

Top 5% 10

0

0

100 80 60 40 20 0

Transposon-induced peaks

500 400 300 200 100 0

Transposon-disrupted peaks

Conserved peaks

20

10

Transposon-induced peaks

60 40 20 0

Top 10%

Transposon-disrupted peaks

LTR: ERV1 LINE: L1 LTR: ERVK LTR: ERVL-MaLR DNA: TcMar-Tigger LINE: L2 LTR: ERVL DNA: hAT-Charlie Other Simple repeat DNA: hAT-Tip100 DNA: TcMar-Mariner LINE: RTE-X Retroposon: SVA Satellite

400 300 200 100 0

Class: Family

Class: Family

B

Conserved peaks

30

LTR: ERV1 LINE: L1 LTR: ERVK LINE: L2 LTR: ERVL LTR: ERVL-MaLR DNA: TcMar-Tigger Simple repeat DNA: hAT (uncertain) DNA: hAT-Charlie DNA: hAT-Tip100 Other DNA: TcMar-Mariner LINE: RTE-X Low complexity Retroposon: SVA Satellite

Counts Counts

Counts

A

Top 10%

Top 5%

Transposon-induced peaks

Transposon-induced peaks

LTR: ERV1 LINE: L1 LTR: ERVK LINE: L2 LTR: ERVL LTR: ERVL-MaLR DNA: TcMar-Tigger Simple repeat DNA: hAT-Charlie DNA: hAT-Tip100 Other

*

-4

-2

0

2

4

Log odds ratio ***

-4

-2

0

Log odds ratio

-2

0

2

2

4

LTR: ERV1 *** LINE: L1 LTR: ERVK LTR: ERVL-MaLR DNA: TcMar-Tigger LINE: L2 LTR: ERVL DNA: hAT-Charlie Other Simple repeat

***

***

-6

-4

Log odds ratio Transposon-disrupted peaks

Transposon-disrupted peaks LTR: ERV1 LINE: L1 LTR: ERVK LINE: L2 LTR: ERVL LTR: ERVL-MaLR DNA: TcMar-Tigger Simple repeat DNA: hAT-Charlie DNA: hAT-Tip100 Other

*

LTR: ERV1 LINE: L1 LTR: ERVK LTR: ERVL-MaLR LINE: L2 LTR: ERVL DNA: hAT-Charlie Other DNA: TcMar-Tigger

4

-3

***

-2

-1

0

1

Log odds ratio

2

3