APPLIED AND ENVIRONMENTAL MICROBIOLOGY, Sept. 2007, p. 5676–5678 0099-2240/07/$08.00⫹0 doi:10.1128/AEM.00278-07 Copyright © 2007, American Society for Microbiology. All Rights Reserved.
Vol. 73, No. 17
Use of an Escherichia coli Recombinant Producing Thermostable Polyphosphate Kinase as an ATP Regenerator To Produce Fructose 1,6-Diphosphate䌤† Seishi Iwamoto,1 Kei Motomura,1 Yasuharu Shinoda,1 Masaaki Urata,1 Junichi Kato,1 Noboru Takiguchi,1 Hisao Ohtake,2 Ryuichi Hirota,1 and Akio Kuroda1* Department of Molecular Biotechnology, Graduate School of Advanced Sciences of Matter, Hiroshima University, Higashi-Hiroshima, Hiroshima 739-8530, Japan,1 and Department of Biotechnology, Osaka University, Suita, Osaka 565-0871, Japan2 Received 3 February 2007/Accepted 16 June 2007
Heat-treated Escherichia coli producing Thermus polyphosphate kinase regenerated ATP by using exogenous polyphosphate. This recombinant could be used as a platform to produce valuable compounds in combination with thermostable phosphorylating or energy-requiring enzymes. In this work, we demonstrated the production of fructose 1,6-diphosphate from fructose and polyphosphate. thermophilus HB27 DNA using the primer pair ppk1/ppk2 (Table 1) and then inserted into pET21-b (EMD Biosciences, Darmstadt, Germany). The resultant plasmid, pETPPKT, was introduced into E. coli Rosetta(DE3)pLysS (EMD Biosciences). His-tagged PPKT was purified from the E. coli recombinant by HisTrap chromatography (GE Healthcare, Piscataway, NJ). The rates of ATP production by purified PPKT (20 ng) were measured in 60 l of 5 mM polyP65 (65 phosphate residues; Sigma, St. Louis, MO), 100 M ADP, 40 mM (NH4)2SO4, 4 mM MgCl2, and 50 mM HEPES-KOH (pH 7.2). The generated ATP was determined using a bioluminescence assay (CLSII; Roche Diagnostics, Basel, Switzerland). PPKT synthesized 3.6 ⫻ 106 pmol of ATP per min per mg protein at 70°C (Fig. 1), which is slightly lower than the maximum velocity of E. coli PPK (8, 9). The optimal temperature for PPKT was between 60°C and 80°C (Fig. 1), whereas E. coli PPK lost its activity over 50°C (data not shown). The optimal pH of PPKT was between 5 and 6. Also, PPKT required magnesium for activity, and high concentrations of ammonium sulfate and potassium chloride inhibited its activity. PPKT preferred to use a long-chain polyP (⬎25 phosphate residues) (Fig. 1). We expected that heat treatment would increase the membrane permeability and allow ATP and polyP to penetrate the cell membrane. A 5-l sample of heat-treated E. coli harboring pETPPKT (7.8 mg ml⫺1) at 70°C for 10 min was mixed with 55 l of 50 mM MOPS (morpholinepropanesulfonic acid)-NaOH
ATP is the most important biological phosphoryl donor and is required for many enzymatic reactions. The direct addition of ATP not only is expensive but also leads to the accumulation of inhibitory by-products, such as ADP or AMP (19). Furthermore, high concentrations of ATP inhibit enzymes such as phosphofructokinase (PFK) (19). These problems can be overcome by including ATP-regenerating systems in the reactions. Inorganic polyphosphate (polyP), a linear chain of many tens or hundreds of phosphates, is an inexpensive phosphagen; a commercial form of polyP costing $9/lb can provide ATP equivalents that, if purchased separately, would cost over $2,000/lb, while other phosphagens able to regenerate ATP, such as phosphoenolpyruvate and phosphocreatine, cost more than ATP. ATP can be synthesized from polyP and ADP with polyP kinase (PPK) (8). This ATP regeneration has recently been applied to the practical synthesis of an oligosaccharide, N-acetyllactosamine (13). Also, ATP can be regenerated from AMP using PPK and polyP-AMP phosphotransferase (15, 18). The genus Thermus has thermostable enzymes that have enormous potential for many industrial applications (4, 12, 14). The production of thermostable enzymes in mesophilic hosts inactivates only host enzymes by a simple heat treatment, which reduces the production of by-products (1, 2). We expected that Thermus thermophilus PPK (PPKT), whose amino acid sequence has 30% identity with that of E. coli PPK (7), would be thermostable and that heat-treated E. coli producing PPKT could be directly used as an ATP regeneration system. We examined the use of this system to generate fructose 1,6diphosphate (FDP), which can be used to reduce ischemic injury in the myocardium, brain, and kidney (3, 5, 10, 11, 16). A DNA fragment encoding PPKT was amplified from T.
TABLE 1. DNA primers Primer
Sequencea
ppk1 ........5⬘-GGAATTCCATATGCACCTCCTTCCCGAAGC-3⬘ ppk2 ........5⬘-GAAGTCGACTAGCTCCAGGCGCTGGGCGT-3⬘ pfk1 .........5⬘-GGCCATATGAAACGCATCGGGGTGTT-3⬘ pfk2 .........5⬘-TATAAGCTTGAGGGCCAGCACCTGCGATA-3⬘ pfk3 .........5⬘-GAAGAATTCAATGAAACGCATCGGGGTGTT-3⬘ pfk4 .........5⬘-TATAAGCTTCTAGAGGGCCAGCACCTGCG-3⬘ fk1 ...........5⬘-AAGGTTCCATATGGTGGAGAAGCCCGCTATC-3⬘ fk2 ...........5⬘-TTTGTCGACGCCCGCAAGCCACCGGGCCC-3⬘ fk3 ...........5⬘-TTTGATATCCTAGCCCGCAAGCCACCGGG-3⬘
* Corresponding author. Mailing address: Department of Molecular Biotechnology, Graduate School of Advanced Sciences of Matter, Hiroshima University, Higashi-Hiroshima, Hiroshima 739-8530, Japan. Phone: 81-82-424-7758. Fax: 81-82-424-7047. E-mail:
[email protected]. † Supplemental material for this article may be found at http://aem .asm.org/. 䌤 Published ahead of print on 6 July 2007.
a
5676
The underlined sequences represent additional restriction enzyme sites.
VOL. 73, 2007
THERMOSTABLE POLYPHOSPHATE KINASE AND ATP REGENERATOR
5677
FIG. 1. Effect of temperature (A), pH (B), MgCl2 (C), (NH4)2SO4 (D), KCl (E), and the length of polyP (F) on the ATP synthesis activity of PPKT. All data shown are representative of two replicates and were almost perfectly reproduced unless otherwise noted. Bars in panel F represent standard deviations in triplicate experiments.
buffer (pH 6.0) containing 0.08 mM ADP, 40 mM (NH4)2SO4, 4 mM MgCl2, and 5 mM polyP65. The heat-treated E. coli recombinant synthesized ATP from external ADP and polyP, leading to the extracellular accumulation of ATP. After heat treatment, PPKT activity was detected in the precipitated cell fraction but not in the supernatant (Fig. 2). More than 60% of PPKT activity was retained even after a 1-week incubation at 70°C (see the supplemental material). To allow the production of FDP in this system, we cloned genes encoding predicted fructokinase (FK) and PFK (20) from T. thermophilus. The FK and PFK DNAs amplified using primer pairs fk1/fk2 and pfk1/pfk2, respectively (Table 1), were inserted into pET21-b. The combined use of the purified PPKT, FK, and PFK synthesized FDP from fructose and polyP75 (data not shown). Also, the combined use of heattreated E. coli recombinants producing FK, PFK, and PPKT synthesized FDP at 70°C (Fig. 3). The reaction was performed in a 500-l mixture containing 50 mM HEPES-KOH (pH 7.0), 10 mM fructose, 10 mM KCl, 10 mM MgCl2, 1 mM ADP, 30 mM polyP75, 4 mg of E. coli (PPKT) cells, 0.5 mg of E. coli (PFK) cells, and 0.5 mg of E. coli (FK) cells. When we used 30 mM ATP instead of polyP, however, we did not observe FDP generation (Fig. 3). This may be ascribed to the fact that FK is perfectly inhibited by 10 mM ATP (see the supplemental material). ATP regeneration overcame this inhibitory effect of ATP. We expected the rate of FDP synthesis to increase if the FK,
PFK, and PPKT reactions occurred in the same cell. We constructed an E. coli recombinant producing FK, PFK, and PPKT simultaneously. Two DNAs encoding FK and PFK were amplified using primer pairs fk1/fk3 and pfk3/pfk4 (Table 1),
FIG. 2. ATP synthesis activity by E. coli producing PPKT. After heat treatment, recombinant E. coli was precipitated. Heat-treated cells (filled circles) and the supernatant (open circles) were examined for the ability to synthesize ATP.
5678
IWAMOTO ET AL.
APPL. ENVIRON. MICROBIOL. This research was supported by BRAIN (Bio-oriented Technology Research Advancement Institution). REFERENCES
FIG. 3. Synthesis of FDP from fructose and polyP75 by E. coli recombinants. FDP was synthesized using 4 mg of E. coli cells producing PPKT, 0.5 mg of E. coli cells producing PFK, and 0.5 mg of E. coli cells producing FK (filled circles). The ratio of PPK to PFK to FK in terms of protein concentration was approximately 8:1:3. FDP was measured as previously reported (6). In a parallel reaction, ADP and polyP75 were replaced by 30 mM ATP as the phosphoryl donor (open circles). FDP was also synthesized using 5.8 mg of E. coli cells producing PPKT, PFK, and FK simultaneously (filled triangles).
respectively, and then inserted into one vector, pRSF-Duet (Takara Co., Kyoto, Japan). The resulting plasmid was introduced into E. coli harboring pETPPKT. The heat-treated E. coli strain producing FK, PFK, and PPKT simultaneously successfully synthesized FDP (Fig. 3). The rate of FDP synthesis increased approximately twofold compared to that of the mixture of heat-treated E. coli strains separately producing FK, PFK, and PPKT. A nearly 100% yield from fructose was accomplished within 3 h. Here, we demonstrated that PPKT is a thermostable PPK and that heat-treated E. coli producing PPKT can be used as an ATP regenerator for at least 1 week at 70°C. The biggest advantages of the present method are the stability of PPKT and the use of an inexpensive phosphagen for ATP regeneration. During the review of our paper, Sato et al. published a study of ATP-requiring D-amino acid dipeptide synthesis using an E. coli strain producing Thermosynechococcus PPK (17), which is thermostable but less so than Thermus PPK. While further research is required to achieve synthetically useful product concentrations, the ATP regenerator described in this paper could be used as a general platform to produce valuable compounds by thermostable phosphorylating or energy-requiring enzymes.
1. Adams, M. W., and R. M. Kelly. 1998. Finding and using hyperthermophilic enzymes. Trends Biotechnol. 16:329–332. 2. Coolbear, T., R. M. Daniel, and H. W. Morgan. 1992. The enzymes from extreme thermophiles: bacterial sources, thermostabilities and industrial relevance. Adv. Biochem. Eng. Biotechnol. 45:57–98. 3. Didlake, R., K. A. Kirchner, J. Lewin, J. D. Bower, and A. K. Markov. 1989. Attenuation of ischemic renal injury with fructose 1,6-diphosphate. J. Surg. Res. 47:220–226. 4. Eichler, J. 2001. Biotechnological uses of archaeal extremozymes. Biotechnol. Adv. 19:261–278. 5. Farias, L. A., M. Willis, and G. A. Gregory. 1986. Effects of fructose-1,6diphosphate, glucose, and saline on cardiac resuscitation. Anesthesiology 65:595–601. 6. Galzigna, L., G. Manani, G. P. Giron, and A. Burlina. 1977. Enzymatic assay of fructose-1,6-diphosphate for the measurement of its utilization by tissues. Int. J. Vitam. Nutr. Res. 47:88–91. 7. Henne, A., H. Bruggemann, C. Raasch, A. Wiezer, T. Hartsch, H. Liesegang, A. Johann, T. Lienard, O. Gohl, R. Martinez-Arias, C. Jacobi, V. Starkuviene, S. Schlenczeck, S. Dencker, R. Huber, H. P. Klenk, W. Kramer, R. Merkl, G. Gottschalk, and H. J. Fritz. 2004. The genome sequence of the extreme thermophile Thermus thermophilus. Nat. Biotechnol. 22:547–553. 8. Kornberg, A. 1995. Inorganic polyphosphate: toward making a forgotten polymer unforgettable. J. Bacteriol. 177:491–496. 9. Kuroda, A., and A. Kornberg. 1997. Polyphosphate kinase as a nucleoside diphosphate kinase in Escherichia coli and Pseudomonas aeruginosa. Proc. Natl. Acad. Sci. USA 94:439–442. 10. Lazzarino, G., M. E. Nuutinen, B. Tavazzi, L. Cerroni, D. Di Pierro, and B. Giardina. 1991. Preserving effect of fructose-1,6-bisphosphate on high-energy phosphate compounds during anoxia and reperfusion in isolated langendorff-perfused rat hearts. J. Mol. Cell. Cardiol. 23:13–23. 11. Markov, A. K., N. C. Oglethorpe, T. M. Blake, P. H. Lehan, and H. K. Hellems. 1980. Hemodynamic, electrocardiographic, and metabolic effects of fructose diphosphate on acute myocardial ischemia. Am. Heart J. 100:639– 646. 12. Niehaus, F., C. Bertoldo, M. Kahler, and G. Antranikian. 1999. Extremophiles as a source of novel enzymes for industrial application. Appl. Microbiol. Biotechnol. 51:711–729. 13. Noguchi, T., and T. Shiba. 1998. Use of Escherichia coli polyphosphate kinase for oligosaccharide synthesis. Biosci. Biotechnol. Biochem. 62:1594– 1596. 14. Persidis, A. 1998. Extremophiles. Nat. Biotechnol. 16:593–594. 15. Resnick, S. M., and A. J. B. Zehnder. 2000. In vitro ATP regeneration from polyphosphate and AMP by polyphosphate:AMP phosphotransferase and adenylate kinase from Acinetobacter johnsonii 210A. Appl. Environ. Microbiol. 66:2045–2051. 16. Riedel, B. J., J. Gal, G. Ellis, P. J. Marangos, A. W. Fox, and D. Royston. 2004. Myocardial protection using fructose-1,6-diphosphate during coronary artery bypass graft surgery: a randomized, placebo-controlled clinical trial. Anesth. Analg. 98:20–29. 17. Sato, M., Y. Masuda, K. Kirimura, and K. Kino. 2007. Thermostable ATP regeneration system using polyphosphate kinase from Thermosynechococcus elongatus BP-1 for D-amino acid dipeptide synthesis. J. Biosci. Bioeng. 103:179–184. 18. Tanaka, S., A. Kuroda, J. Kato, T. Ikeda, N. Takiguchi, and H. Ohtake. 2001. A sensitive method for detecting AMP by utilizing polyphosphate-dependent ATP regeneration and bioluminescence reactions. Biochem. Eng. J. 9:193– 197. 19. Whitesides, G. M., H. Bertschy, and G. Baudin. 1995. Formation and cleavage of POO bonds, p. 505–545. In K. Drauz and H. Waldmann (ed.), Organic synthesis: a comprehensive handbook. VCH Publishers, Weinheim, Germany. 20. Yoshida, M. 1972. Allosteric nature of thermostable phosphofructokinase from an extreme thermophilic bacterium. Biochemistry 11:1087–1093.
