Volume 34 Issue 4 | Molecular Biology and Evolution | Oxford Academic

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Antibiotic Cycling and Antibiotic Mixing: Which One Best Mitigates Antibiotic Resistance? Robert Eric Beardmore; Rafael Peña-Miller; Fabio Gori; Jonathan ...
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Editor’s Dinner at SMBE 2007 LETTER

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Analysis of Rare Amino Acid Replacements Supports the Coelomata Clade Igor B. Rogozin, Yuri I. Wolf, Liran Carmel, and Eugene V. Koonin

RESEARCH ARTICLES 2598

Evolutionary Analysis of Amino Acid Repeats across the Genomes of 12 Drosophila Species Melanie A. Huntley and Andrew G. Clark

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Neutrality, Compensation, and Negative Selection during Evolution of B-Cell Development Transcriptomes Reinhard Hoffmann, Claudio Lottaz, Thomas Kühne, Antonius Rolink, and Fritz Melchers

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Jared V. Goldstone, Heather M. H. Goldstone, Ann M. Morrison, Ann Tarrant, Suzanne E. Kern, Bruce R. Woodin, and John J. Stegeman

Insights from Modeling Protein Evolution with Context-Dependent Mutation and Asymmetric Amino Acid Selection Christopher T. Saunders and Phil Green

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Evolution of the Xenopus piggyBac Transposon Family TxpB: Domesticated and Untamed Strategies of Transposon Subfamilies Akira Hikosaka, Toshihiro Kobayashi, Yumiko Saito, and Akira Kawahara

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Molecular Diversity at 18 Loci in 321 Wild and 92 Domesticate Lines Reveal No Reduction of Nucleotide Diversity during Triticum monococcum (Einkorn) Domestication: Implications for the Origin of Agriculture B. Kilian, H. Özkan, A. Walther, J. Kohl, T. Dagan, F. Salamini, and W. Martin

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A General Comparison of Relaxed Molecular Clock Models A Degenerate ParaHox Gene Cluster in a Degenerate Vertebrate Rebecca F. Furlong, Ruth Younger, Masanori Kasahara, Richard Reinhardt, Michael Thorndyke, and Peter W. H. Holland

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Patterns of Mutation and Selection at Synonymous Sites in Drosophila Nadia D. Singh, Vanessa L. Bauer DuMont, Melissa J. Hubisz, Rasmus Nielsen, and Charles F. Aquadro

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Rapid Evolution of Female-Biased, but Not Male-Biased, Genes Expressed in the Avian Brain Judith E. Mank, Lina Hultin-Rosenberg, Erik Axelsson, and Hans Ellegren

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Heterogeneous Rate of Protein Evolution in Serotonin Genes Aida M. Andrés, Coralie de Hemptinne, and Jaume Bertranpetit

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Multicopy Suppression Underpins Metabolic Evolvability Wayne M. Patrick, Erik M. Quandt, Dan B. Swartzlander, and Ichiro Matsumura

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Spiralian Phylogenomics Supports the Resurrection of Bryozoa Comprising Ectoprocta and Entoprocta Bernhard Hausdorf, Martin Helmkampf, Achim Meyer, Alexander Witek, Holger Herlyn, Iris Bruchhaus, Thomas Hankeln, Torsten H. Struck, and Bernhard Lieb

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Likelihood and Approximate Likelihood Analyses of Genetic Structure in a Linear Habitat: Performance and Robustness to Model Mis-Specification François Rousset and Raphaël Leblois

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Population Genetics of Speciation in Nonmodel Organisms: I. Ancestral Polymorphism in Mangroves Renchao Zhou, Kai Zeng, Wei Wu, Xiaoshu Chen, Ziheng Yang, Suhua Shi, and Chung-I Wu

Volume 24 • Number 12 • December 2007

Thomas Lepage, David Bryant, Hervé Philippe, and Nicolas Lartillot

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EVOLUTION

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AND

Cytochrome P450 1 Genes in Early Deuterostomes (Tunicates and Sea Urchins) and Vertebrates (Chicken and Frog): Origin and Diversification of the CYP1 Gene Family

MOLECULAR BIOLOGY

Contents

(Contents continued on inside back cover) oxford

Published on behalf of the Society for Molecular Biology and Evolution

MBE

ISSN 0737-4038

www.mbe.oxfordjournals.org

MOLECULAR B IOLOGY

AND

E VOLUT I ON

Volume 24 • Number 12 • December 2007

(Contents continued from outside back cover) 2755

Evidence for a Trade-Off between Translational Efficiency and Splicing Regulation in Determining Synonymous Codon Usage in Drosophila melanogaster Tobias Warnecke and Laurence D. Hurst

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The Tetratricopeptide Repeats of Receptors Involved in Protein Translocation across Membranes Thomas Schlegel, Oliver Mirus, Arndt von Haeseler, and Enrico Schleiff

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Multiple Origins and Rapid Evolution of Duplicated Mitochondrial Genes in Parthenogenetic Geckos (Heteronotia binoei; Squamata, Gekkonidae) Matthew K. Fujita, Jeffrey L. Boore, and Craig Moritz

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A Study of the Coevolutionary Patterns Operating within the env Gene of the HIV-1 Group M Subtypes Simon A. A. Travers, Damien C. Tully, Grace P. McCormack, and Mario A. Fares

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The Repertoire of Minimal Mobile Elements in the Neisseria Species and Evidence That These Are Involved in Horizontal Gene Transfer in Other Bacteria Lori A. S. Snyder, Simon McGowan, Matthew Rogers, Eris Duro, Ewan O’Farrell, and Nigel J. Saunders

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Relaxed Constraint and Evolutionary Rate Variation between Basic Helix-Loop-Helix Floral Anthocyanin Regulators in Ipomoea Matthew A. Streisfeld and Mark D. Rausher

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Protist Homologs of the Meiotic Spo11 Gene and Topoisomerase VI reveal an Evolutionary History of Gene Duplication and Lineage-Specific Loss Shehre-Banoo Malik, Marilee A. Ramesh, Alissa M. Hulstrand, and John M. Logsdon Jr.

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Intron Loss and Gain in Drosophila Jasmin Coulombe-Huntington and Jacek Majewski

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Treasurer’s Report for Financial Year 2006 Marta L. Wayne

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Society for Molecular Biology and Evolution (SMBE) Council and Business Meetings, 2007, Halifax, Canada Editor’s Report for 2006 William Martin

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Reviewers Index