WT 76-9 4-1 2-4 3-7 2-8 4-2 2-5 WT 76-9 4-1 2-4 3-7 ...

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Fig. S2. Southern hybridization analysis of the left (A) and right end (B) of the. SA1-8 chromosome. Only PstI (Ps) and BamHI (Ba) sites are shown for the left.
2-5

4-2

2-8

3-7

2-4

4-1

76-9

WT A B C D/E F G1/G2 H I J K L M P/O/N Q R S/T U V W X

Fig. S1. AseI restriction patterns of genomic DNA of spontaneous bald mutants from 76-9. No obvious rearrangements were found among derivatives of 76-9.

W

Ps

Ps

A Left end

WT

(kb)

2 kb

SA1-8

Marker

WT

SA1-8

1 kb

10 8 6 5 4 3 2 1.6 1

Ba

W

Dr

B

Right end 4.7 kb

10 8 6 5 4 3

WT

(kb)

SA1-8

Marker

WT

SA1-8

1 kb

4.7

2

1

Dr

Fig. S2. Southern hybridization analysis of the left (A) and right end (B) of the SA1-8 chromosome. Only PstI (Ps) and BamHI (Ba) sites are shown for the left and right end, respectively. Locations of probe W and probe Dr are indicated.

G1/ G2

SA1-6

WT

WT

SA1-6

D

D/E NA4

NA4

P

P/O/N

N4

Fig. S3. Southern hybridization analysis of AseI macrorestriction fragments of the SA1-6 chromosome with probe N4, which detected the novel junction fragment NA4 formed by joining the partial deleted fragment P and fragment D.

A

SA1-7

SA1-6

SA1-7

SA3-1

SA1-8

g 10

g3

g4

B

Fig. S4. Generational stability analysis of bald mutants. (A) Chromosomal structures of SA1-8 and SA1-6 remained unchanged after ten passages of growth, whereas those of SA1-7 and SA3-1 were altered. Characteristic novel bands of SA1-7 and SA3-1 were lost, without appearance of new bands. (B) The chromosome of SA1-7 changed in the 4th passage. Arrows: missing bands.