Additional file 6 â The alignment of the genomic
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Additional File 5: Identified hairpins in Epstein-Barr Virus with L = 1.0 ... 7405-7483 on AJ507799 (+) in Epstein Barr virus. L score. 1.0 structure cac acua u. a g a.
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1. Text S3a 1. Alignment of deduced U lineage alpha 1 domain amino acid (aa) sequences. 2. 2. Alignment of deduced U lineage alpha 2 domain aa sequences.
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V R FK. A P M H V LA -. S Q A M IEF -. G KE K L LKYW -. L E RN. MV H IQ. P P M A V LA - .... AP2 si9. AP2 si11. AP2 si12. AP2si13. AP2si14. AP2si15. AP2 si16. AP2si17. AP2 si18 ... O O 00 N O UN W P 0 0 00 N O UN A W ÑоÑлE (де. A W W W W. LO LO
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Additional file 6 â The alignment of the genomic sequences encompassing exon 8 from species of the obscura group. Only the focal part of this alignment ...
Additional file 6 — The alignment of the genomic sequences encompassing exon 8 from species of the obscura group. Only the focal part of this alignment immediately at and near exon 8 is presented. All genomic fragments were amplified and sequenced from species of the obscura group. Exon 8 is highlighted in grey. The splicing sites around exon 8 are underscored. Each tested species had a valid ORF in exon 8. In addition, we found that exon 8 was transcribed in D. pseudoobscura and D. persimilis, D. obscura, D. bifasciata, D. subobscura and D. affinis adult flies (fig. 2B). Because these species represent all major branches within the obscura group [1, 2], exon 8 originated very early in the lineage of the obscura group. D. pseudoobcura bogotana Ayala & Dobzhansky, 1974 (bog.) is a geographically isolated subspecies of D. pseudoobcura.
References 1. O'Grady PM: Reevaluation of phylogeny in the Drosophila obscura species group based on combined analysis of nucleotide sequences. Mol Phylog Evol 1999, 12(2):124-139. 2.
Prud'homme B, Gompel N, Rokas A, Kassner VA, Williams TM, Yeh S-D, True JR, Carroll SB: Repeated morphological evolution through cis-regulatory changes in a pleiotropic gene. Nature 2006, 440(7087):1050–1053.
