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Cyanide Detoxifying Enzyme: Rhodanese Mayank Chaudhary and Reena Gupta* Department of Biotechnology, Himachal Pradesh University, Summer Hill, Shimla-171 005, India Abstract: Rhodanese is an ubiquitous enzyme active in all living organisms from bacteria to man. It is multifunctional enzyme but plays central role in cyanide detoxification. This enzyme is also widely distributed in plants. It functions through double displacement (ping pong) mechanism. The activity of rhodanese in a particular tissue reflect the ability of that tissue to detoxify cyanide. The level of rhodanese in different tissues of animals is correlated with the level of exposure to cyanide. Mitochondrial bovine rhodanese is the best characterized rhodanese which is 293 amino acids long consisting of inactive N-terminal and catalytic C-terminal domain. It comprises of single polypeptide chain of 32,900 Da folded into two domains of about equal size. Active site of rhodanese has essential sulfhydryl and aromatic groups in close proximity. In addition to this, competitive inhibition of rhodanese by aromatic ions suggests the presence of tryptophanyl residue at the active center. Sequence analysis of rhodanese-like proteins highlights their heterogeneity to form rhodanese superfamily presenting variably arranged rhodanese domains as single or tandem domains, or combined with other protein domains. Many methods for rhodanese assay have been reported but the most common one is colorimetric estimation of thiocyanate formed from the reaction of cyanide with thiosulphate catalyzed by rhodanese.
Keywords: Rhodanese, ubiquitous, cyanide, detoxification, domain, thiosulphate, thiocyanate, mitochondrial enzyme, double displacement mechanism, toluene, ageing, colonic epithelium. INTRODUCTION Cyanogenic glycosides are phytotoxins that occur in at least 2000 plant species, many of which are used as food in tropical countries [1]. Cassava and sorghum are important staple foods containing cyanogenic glycosides [2, 3]. There are approximately 25 cyanogenic glycosides known. The potential toxicity of a cyanogenic plant depends primarily on the potential that its consumption will produce HCN that is highly toxic. Mortality in livestock on consumption of cyanogenic glycosides has been reported [4,5]. Cyanide poisoning in humans has also been reported from eating plant materials such as bitter almond, cassava beans, apricot pits and lima beans [6]. Many naturally occurring substances as well as industrial products contain cyanide [7]. Many studies report death of birds from cyanide poisoning through several routes including exposure to cyanide salts or ingestion of cyanogenic plants [8]. Cyanide is also present in some insecticides, rodenticides, metal polishes, electroplating solutions, gold and silver extraction and fumigants and also in variety of metallurgical processes. The waste discharge from these industries can contain large amounts of cyanide and act as a source of poisoning [9]. Numerous accidental spills of sodium cyanide or potassium cyanide into rivers and streams have resulted in massive killing of fishes, amphibians and aquatic vegetation [10]. Although several chemical methods for treatment of cyanide polluted wastewater are currently available, they are relatively expensive and challenge the
environment for the release of chemical agents potentially causing secondary pollution [11]. The extreme toxicity of cyanide and environmental concerns from its continued industrial use continue to generate interest in facile and sensitive methods for cyanide detection [12]. Cyanide is a potent toxic agent that causes death by inhibition of cellular oxidising enzyme such as Cytochrome oxidase. Inhibition of cytochrome oxidase causes intracellular respiratory cessation and tissue anoxia, mainly leading to the dysfunction of neural cells and symptoms of CNS failure [6,7,13]. Thus cyanide is acutely toxic to mammals by all routes of administration with a very steep and dose dependant curve involving cytochrome oxidase inactivation [12]. The enzyme which plays central role in cyanide detoxification is mitochondrial enzyme named rhodanese. The enzyme was named rhodanese from the german name for thiocyanate (rhodanid) with the ending ‘ese’ indicating that this compound was formed through the enzymatic reaction [14]. The enzyme rhodanese (E.C. 2.8.1.1., thiosulphate: cyanide sulphurtransferase) is an ubiquitous enzyme present in all living organisms from bacteria to man [15-20]. Highest activity of rhodanese was found in kidney, followed by liver, brain, lungs, muscle and stomach in case of humans [21] (Table 1). Jarbak and Westley (1974) studied human liver rhodanese and showed that it differed from bovine liver rhodanese in kinetic behaviour and UV absorption properties [22]. Genetic polymorphism of rhodanese in human erythrocytes has been reported [23]. PHYSIOLOGICAL FUNCTION
*Address correspondence to this author at the Department of Biotechnology, Himachal Pradesh University, Summer Hill, Shimla-171 005, India; Tel: 91177-2831948; Fax: 91-177-2831948; E-mail:
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2211-55;/12 $58.00+.00
The physiological role of rhodanese (E.C 2.8.1.1., thiosulphate: cyanide sulphurtransferase ) in different species is controversial. The main role attributed to this enzyme is © 2012 Bentham Science Publishers
328 Current Biotechnology, 2012, Volume 1, No. 4
Table 1.
Chaudhary and Gupta
Specific Activity of Rhodanese (U/mg Protein) in Selected Tissues of Human and Some Domestic Animals [21] Species
Tissues Sheep
Cattle
Goat
Camel
Horse
Pig
Dog
Chicken
Human
Liver
5.21
4.95
2.93
1.7
1.7
0.56
0.18
0.31
0.15
Rumen
16.3
10.3
3.31
0.28
Muscular layer
0.09
0.05
0.01
Cortex
1.7
0.82
0.94
0.08
1.4
0.4
0.06
0.08
0.96
Medulla
0.24
0.05
0.25
0.1
Brain
0.48
0.36
0.47
0.13
0.15
Nd
0.32
Nd
0.03
Lung
0.24
0.13
0.36
0.24
0.03
0.04
0.02
0.01
0.02
Epithelial layer
Kidney
Stomach
0.1
0.07
Abomasal fundus
0.09
0.04
0.35
0.07
0.13
Abomasal pylorus
0.1
0.04
0.31
0.02
0.006
0.01
Muscular layer of proventriculus
0.09
Epithelial layer of proventriculus Muscle
0.59 0.04
0.02
0.08
0.05
0.15
0.07
0.04
Nd
0.01
cyanide detoxification [15,16,24,25]. It is responsible for biotransformation of cyanide to thiocyanate using thiosulphate as donor substrate.
-
S2O32 - + CN-
Rhodanese
SCN- + SO32
Liver has always been considered to be the major source of rhodanese and is believed to be the major site of cyanide detoxification [26]. The activity of enzyme in a particular tissue/organ reflect the ability of that tissue/organ to detoxify cyanide [27]. It has been suggested that the level of rhodanese in different tissues of animals is correlated with the level of exposure to cyanide [15,28,29]. Activity of rhodanese is higher in those tissues that are more exposed to cyanide due to high blood supply [21]. The pattern of distribution of rhodanese in different animals appears to be highly species and tissue specific. No significant difference was seen between liver and kidney rhodanese activity in pigeon whereas in Japanese quail, rhodanese activity in kidney was significantly higher than that of liver [30]. Rhodanese activity in digestive tract of chicken was different at different stages of development [21]. All of the tissues in case of cat contain rhodanese activity. In terms of specific activity, colon and rectum mucosal layer and testis were found to be the richest sources of this enzyme followed by ovary, mucosal layer of jejunum and liver [31]. Role of rhodanese in cyanide detoxification and aging can also be attributed due to the fact that injury of mitochondrial function and decline of antioxidant capability are important reasons for aging of human colonic epithelium [32]. Downregulation of rhodanese in aged human colonic epithelium indicated that aging colonic epithelium decreases in the ability of cyanide detoxification (Fig. 1, Table 2).
Fig. (1). The expression of Rack1, EF-Tu and Rhodanese proteins in senescent NIH/3T3 cells. (A) - Gal activity measured by X-Gal cytochemical staining in the D-Gal-exposed (senescent) and unexposed (control) NIH/3T3 cells; (B) a representative result of Western blot shows the downregulation of Rack1, EF-Tu and Rhodanese expression in the D-Gal-exposed (senescent) NIH/3T3 cells compared with unexposed (control) NIH/3T3 cells. Actin was used as an internal control for loading [32].
Cyanide Detoxifying Enzyme: Rhodanese
Table 2.
Current Biotechnology, 2012, Volume 1, No. 4
Expression Levels of Three Differential Proteins in the Colonic Epithelium of Young and Old Peoplea [32] Staining Score
Protein Rack 1
Group
0-2
3-4
5-6
Total
Young
6
9
15
30
Old
14
13
3
30
Young
5
15
10
30
Old
17
12
1
30
Young
10
13
7
30
Old
21
6
3
30
EF-Tu
P 0.001
0.000
Rhodanese
0.007
a
The expression levels of three differential proteins were significantly higher in the colonic epithelia in young group than in old group by Mann-Whitney U test.
Down-regulation or suppression of colonic rhodanese that prevents detoxification of H2S is involved in inflammatory bowel disease (IBD). The delayed enhancement of rhodanese activity in RBCs, a possible compensative event, might be available as a disease marker for IBD [33]. Impaired rhodanese expression is associated with increased whole cell reactive oxygen species as well as higher mitochondrial superoxide production and predicts mortality in hemodialysis patients [34]. Rhodanese is responsible for the import of 5S rRNA into mitochondria as silencing of the rhodanese gene caused not only a proportional decrease of 5S rRNA import but also a general inhibition of mitochondrial translation, indicating the functional importance of the imported 5 S rRNA inside the organelle [35]. The capacity of Bacillus stearothermophilus to detoxify cyanide was greatly increased in mutants showing 5 to 6 folds of rhodanese activity than wild type [36]. Moreover, rhodanese from cyanogenic bacterium Pseudomonas aeruginosa has been reported to contribute cyanide detoxification [14,37]. Mycobacterium tuberculosis also encodes a probable rhodanese-like thiosulfate sulfurtransferase [38]. Coexistence of several rhodanese like proteins in same organism suggests its different physiological roles [14]. Distribution of rhodanese in both larvae and adults of insects that are not exposed to cyanides through feeding on cyanogenic plants indicated other possible roles of this enzyme. This enzyme is also involved in formation of iron sulphur centres [39], participation in energy metabolism [40,41], biosynthesis of molybdenum cofactor in humans [42]. It also functions as thioredoxin oxidase [43]. It has been suggested that the reversible sulphur transfer to and from rhodanese is an important feature of the role played by this enzyme in energy metabolism [39,40,44]. Rhodanese controls the rate of respiratory chain and ATP production by reversible sulphuration of key iron- sulphur centres and affects activity of enzymes like succinate dehydrogenase, NADH dehydrogenase. Rhodanese is also involved in biosynthesis of iron-sulfur clusters [45]. The iron-sulfur clusters of ferroxidans, succinate dehydrogenase, mitochondrial NADH dehydrogenase can be reconstituted by incubation with rhodanese, a sulfur donor, a sulfur acceptor and an iron source [40,41,46]. It also prevents against oxidative stress in Azotobacter vinelandii [47]. In addition to this it plays role
329
in sulphur and selenium metabolism. The expression of rhodanese like protein from Acidithiobacillus ferrooxidansis induced during growth on sulphur compounds to generate thiosulphate which is used as electron donor by this chemolithotrophic bacterium [48]. Rhodanese also generate reactive form of selenium for synthesis of selenophosphate (SePO32-) which is active selenium donor compound required by bacteria and eukaryotes for synthesis of Se Cys-tRNA [49]. These enzymes are involved in selenium metabolism as incubation of bovine rhodanese with selenite in the presence of glutathione resulted in formation of an equimolar rhodanese-selenium adduct that was capable of serving as a selenium donor for selenophosphate synthetase [50]. In rhodopseudomonas spheroids rhodanese catalyses the formation of cysteine from cysteine trisulphide [51]. A possible role of the enzyme in modulating S-amino levulinate synthetase activity has also been reported [52]. STRUCTURE Rhodanese enzyme of bovine liver mitochondria is a single polypeptide chain of 32,900 Da which is folded into two domains of about equal size [53,54]. Another rhodanese from bovine liver is a dimer of 37,000 Da with two catalytic sites which is dissociable into identical subunits [55]. Rhodanese enzyme of 14,000 Da molecular weight has been purified from E. coli [56]. Bovine liver rhodanese contains 293 amino acids. The protein consists of two equally sized globular domains, the inactive N-terminal and catalytic Cterminal showing identical / topology. Each domain is 120 amino acids long with low sequence similarity. Only Cterminal carries 6 amino acid active site loop having cysteine at first position involved in the catalytic process. The counterpart of cys residue in N-terminal domain is an aspartate residue which has no involvement in catalysis [57]. The pecularity of rhodanese resides in pattern of amino acid sequences at both N- and C- terminal. These sequences called ‘rhodanese signatures’ have remarkable degree of conservation among rhodanese and therefore are used to recognize these proteins encoded by different genomes (Fig. 2). Pseudomonas aeruginosa rhodanese shows 79% and 22% sequence identity with Azotobacter vinelandii rhodanese and bovine liver rhodanese respectively, but no striking differences emerge by comparing their 3 Dstructures as shown in Fig. (3). RHODANESE SUPERFAMILY Rhodanese is widely distributed in eubacteria, archae and eukarya. Analysis of sequences highlights that they are highly heterogenous despite conservation of rhodanese signatures [58]. Genome analysis of Pseudomonas aeruginosa reveals the presence of 10 rhodanese-like proteins belonging to each of the rhodanese groups proposed below [19]. Group I - Single Domain Proteins This family includes those proteins that contain either a catalytic or an inactive rhodanese domain. e.g. E. coli GlpE, contains a single 108 amino acid rhodanese domain
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Chaudhary and Gupta
Fig. (2). Partial sequence alignment of the rhodanese domains from representative members of the rhodanese superfamily: Rhobov (P00586), E. coli SseA (P31142), A. vinelandii RhdA (P52197), P. aeruginosa RhdA (Q9HUK9), human Cdc25A (P30304), E. coli GlpE (P0A6V5), W. succinogenes Sud (Q56748), and E. coli ThiI (P77718). Rhodanese signatures are highlighted in grey. Residues forming the six-amino acid active-site loop of the catalytic domain are underlined. Amino acid sequences were retrieved from Swiss-Prot/TrEMBL database (www.expasy.org/sprot/) and aligned with the program CLUSTAL_W with default parameters. Identical residues, conserved and semiconserved substitutions are indicated by asterisks, colons, and periods, respectively. Note that translation of Rhobov reading frame differs from chemically determined amino acid sequence by an N-terminal Methionine and the three residue C-terminal extension Gly-Lys-Ala (not shown in the figure) [14].
demonstrating that a single domain can be self sufficient for thiocyanate formation from thiosulphate in presence of cyanide [59]. Single catalytic rhodanese domain proteins are encoded by both eukaryotic and prokaryotic genomes. These proteins have been associated with stress conditions as HSP 67-B2 in Drosophila melanogaster [60], shock protein Q9KN65 in Vibrio cholera [61], leaf senescence in plants as
Sen1 in Arabidopsis thaliana [62], Ntdin in Nicotianatabacum, sulphur oxidation as P15 from bacterium Acidithiobacillus ferrooxidans [63], Ygr203w protein in Saccharomyces cerevisiae [64]. A hyperthermophile bacterium, Aquifex aeolicus is also characterized by the presence of single domain rhodanese [65].
Cyanide Detoxifying Enzyme: Rhodanese
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vinelandii, Pseudomonas aeruginosa, Arabidopsis thaliana, Leishmania major and E. coli [37]. Group III – Multidomain Proteins In these the catalytic rhodanese domain is often combined with other characterized protein domains. This family includes ThiI and ThiF/MoeB-related proteins which are involved in metabolism of sulphur containing biomolecules thiamine and molybdoprotein, respectively [70], Human cytosolic MOCS3 protein which contains an Nterminal MoeB-like domain and a C-terminal module displaying similarities with rhodanese [71], E. coli YbbB protein, which consists of rhodanese catalytic domain and second domain containing a P-loop (Walker A) motif [50]. In the proposed ThiI reaction mechanism, a partner desulfurase (IscS) first catalyzes the transfer of sulfur from free cys to the cys catalytic residue of the rhodanese homology domain of ThiI which in turn becomes the sulfur source for thiamine and 4-thiouridine biosynthesis [72]. The rhodanese domain of ThiI is also necessary for synthesis of Thiazole moiety of thiamine in Salmonella enterica [73]. Group IV – Elongated Active-Site Loop Proteins
Fig. (3). Three-dimensional structure of Rhobov (1RHD), A. vinelandii RhdA (1E0C) and P. aeruginosa RhdA. The three dimensional structure of Rhobov and A. vinelandii RhdA were recovered from the Protein Data Bank (www.rcsb.org). Homology modelling of P. aeruginosa RhdA has been obtained using A. vinelandii RhdA as the template and the SWISS-MODEL facility (http://swissmodel.expasy.org/ SWISS-MODEL.html) [14].
Proteins displaying only the inactive domain, i.e., lacking the active cys residue, are less common and restricted to the eukaryotic dual specific MAPK-phosphatases, yeast (Ubp4, Ubp7, Ubp8) and mammalian (Ubp-Y) ubiquitin hydrolases [66,67]. The only reported case of a single domain endowed with different activity from TST is the polysufide: cyanide ST Sud from eubacterium Wolinella succinogenes, a periplasmic protein which uses the same cys residue not only for catalyzing the sulfur transfer but only for additional hydrolase activity [68]. Group II – Tandem Domain Proteins This group contains both domains but utilizes 3mercaptopyruvate as specific sulphur donor to catalyze sulphur transfer reaction. Transfer of sulphur atom seems to occur via a single displacement mechanism without formation of stable persulphide intermediate [69]. The main differences between thiosulphate sulphurtransferase (TST) and mercaptopyruvate sulphurtransferase (MST) occur at the level of active site loop amino acid sequences. The amino acid properties of active site loop of known TST and MST correlates with the distinct ionic charge of their substrates [58]. These proteins have been characterized from different eukaryotic and prokaryotic sources including Azotobacter
This family of proteins contains an elongated stretch of rhodanese active-site loop. It includes Cdc25A phosphatases that are involved in dephosphorylation of cyclin-CDK complexes for the progression of the cell cycle. In this case, the catalytic cys residue directly attacks the phosphate atom of the phosphorylated cyclin-CDK complex forming phosphocysteine intermediate in the rhodanese homology [74]. Human Cdc25A catalytic domain shows structural similarity with each half of tandem domain rhodanese [58,67]. Other proteins present with similar amino acid sequence are CDC25 protein from Arabidopsis thaliana, Acr2 protein from Saccharomyces cerevisiae, YnjE from Escherichia coli [75] and Yg4E protein. ACTIVE SITE The active site of rhodanese consists of sulfhydryl and aromatic groups in close proximity. The strongest evidence supporting this fact is the protection of the essential enzymic sulfhydryl group by aromatic inhibitors competitive with thiosulfate. The inactivation of rhodanese with a small molar excess of hydrogen peroxide that relies on modification limited to the active site, consisting of the oxidation of the essential sulfhydryl to sulfenyl group (-S-OH) also supports this [76]. The catalytic site of rhodanese is located in the bottom of the crevice formed by the two domains of the enzyme [77]. The complete loss of enzymic activity on reaction with alkylating agents, aromatic nitro compounds or aliphatic mercaptans indicate the importance of sulfhydryl groups for catalysis. Three different types of reagents inactivate rhodanese by their effects on one of the two sufhydryl groups of the rhodanese monomer (Fig. 4). The aromatic nitro compounds inhibit by causing intermolecular oxidation between two enzyme monomers; the mercaptans, by forming mixed disulfides with enzyme monomer; the alkylating agents, by direct substitution on the enzyme cysteinyl sulfur [78]. The presence of tryptophanyl residue at active center of rhodanese has also been suggested. The
332 Current Biotechnology, 2012, Volume 1, No. 4
inhibitor action of aromatic sulfonates is correlated with effectiveness as an electron acceptor. This behaviour is consistent with inhibitor action by complex formation with tryptophanyl residue in the active site. Rhodanese catalysed thiocyanate formation is inhibited by aromatic ions but not by aliphatic ions because aromatic thiosulfonates have higher inverse Michaelis constant values than aliphatic thiosulfonates. Rhodanese inactivation by number of thiol reagents provided main evidence for the need of free thiol group in the active site of the enzyme. The active form of rhodanese contains four cysteine residues (63, 247, 254, and 263) that are all reduced. The cysteine 247 is at the active site of rhodanese and it forms a persulfide linkage with the sulphur transferred from thiosulfate [79]. Cationic group at active site is also necessary for maximal activity [80]. The presence of strong apolar environment in the active site has been suggested by the need of intact tryptophan residue [81].
Chaudhary and Gupta
thiocyanate ion, there by regenerating the free enzyme [56, 84]. The enzyme functions through ping pong mechanism (Fig. 5). SSO32-
E
SCN-
(Thiosulphate)
(Rhodanese)
(Thiocyanate)
(E.SCN-) ***
(E.SSO32-) *
SO32-
ES **
(Sulphite)
CN(Cyanide ion)
Fig. (5). Mechanism of action of Rhodanese. * Rhodanese thiosulphate complex, ** Rhodanese sulphate complex, *** Rhodanese thiocyanate complex.
ASSAY METHODS FOR RHODANESE
Fig. (4). Loss of enzymic sulfhydryl groups on inactivation by mdinitrobenzene, -mercaptoethanol, and iodoacetate. The symbols refer to the following treatments: , dinitrobenzene; , mercaptoethanol; , iodoacetate; , treatment with dinitrobenzene to 6.4% of initial activity followed by reactivation with Na2S2O3; , treatment with mercaptoethanol to 40% of the initial activity and reactivation with Na2S2O3. The curve was drawn on the assumption that one intact -SH per rhodanese monomer was essential for activity. The percentage enzyme activity was calculated based on a specific activity of 260 units per mg of protein for pure native rhodanese (4, 5). The abscissa represents the difference in the number of -SH groups per monomer between the native and the modified enzyme [81].
MECHANISM OF ACTION Rhodanese catalyzes the reaction via double displacement mechanism involving the formation of persulphide containing intermediate (Rhod-S), in which the transferring sulphur is bound to catalytic cys residue [58]. The mechanism involves binding of thiosulphate to a metal ion in the enzyme. This causes weakening of S-S bond making it more susceptible to attack by strong enzymic nucleophile [82]. The enzyme substrate (E-S) complex differing in reactivity depending on the nature of sulphur donor substrate [83] is formed by discharging sulphite ion from enzyme-thiosulphate complex. The acceptor substrate, cyanide ion then combines with E-S intermediate to form
Various methods for rhodanese assay have been reported. The most common of all is colorimetric measurement of formation of thiocyanate from cyanide and thiosulphate, which is reacted with ferric nitrate reagent to form red-brown acidic iron-thiocyanate complex. This complex is then estimated colorimetrically at 460 nm [85-87]. This method is suitable for measuring rhodanese activity of any degree of purity. This method is not applicable for plant homogenate [88] and microorganisms because thiocyanate production occurred by both enzymatic and non-enzymatic method. As a result a new and improved assay for rhodanese in Thiobacillus sp. was given [89]. This method was devised to determine the contributions of each of these reactions to total thiocyanate production. Determination of rhodanese activity in soil samples involves incubation of buffered substrates and toluene [90]. In addition to this, another method for determination of enzyme in polyacrylamide gel after electrophoresis was also developed [91]. Another method of rhodanese determination using Ion-Selective membrane electrodes has been reported [92]. This method uses cyanide-sensitive membrane electrodes to monitor rates of enzyme catalyzed reactions under controlled conditions. Data on electrode parameters and experimental conditions are then critically evaluated for analytical purposes. This method is more rapid and convenient but less sensitive when compared to colorimetric method. Determination of rhodanese activity by NMR has also been reported [93]. This method is suitable for studying enzymic reactions which result in either major chemical change or deuteration of substrate as it detects changes in the chemical environment of all 1H nuclei present in the reaction mixture. Rhodanese from Thiobacillus A2 was shown by NMR spectroscopy to use dihydrolipoate or dihydrolipoamide as acceptor of sulphane moiety from thiosulphate with the production of -lipoate and lipoamide respectively. A simple method based on the differential colour formation profile was reported [94]. Positive reaction was indicated by brownish-red colour, weakly positive by pale orange colour and negative result by honey yellow or faint yellow. A method for assay of rhodanese activity using
Cyanide Detoxifying Enzyme: Rhodanese
pH-STAT apparatus was also reported [95]. A colorimetric method based on determination of sulphite was also devised [96]. CONCLUSION Rhodanese catalyzes the transfer of sulphanesulphur from a donor molecule such as thiosulphate to a nucleophilic acceptor such as cyanide involved in some cellular processes (e.g., biosynthesis of cofactors and thionucleosides) and in environmental adaptation (e.g., cyanide detoxification). The increasing number of novel rhodanese-like proteins with diverse and highly specified functions supports the notion that rhodaneses are involved in different cellular processes and coexist within the same organism since they accomplish essential cell functions. The availability of large-scale genomic databases holds out the prospect of discovering novel rhodanese classes which can infer an even wider range of functions than those presently known.
Current Biotechnology, 2012, Volume 1, No. 4 [15]
[16] [17]
[18] [19] [20]
[21] [22]
[23]
CONFLICT OF INTEREST The authors declare no conflict of interest.
[24] [25]
ACKNOWLEDGEMENTS The financial grant in the form of a Research Fellowship (DBT) given by Department of Biotechnology, Ministry of Science and Technology, Govt. of India to Mayank Chaudhary and to Department of Biotechnology, H.P. University, Shimla (India) is thankfully acknowledged. REFERENCES [1] [2] [3] [4]
[5]
[6] [7] [8] [9] [10] [11]
[12] [13]
[14]
Vennesland B, Castric PA, Conn EE, Solomonson LP, Westley J. Cyanide metabolism. Fed Proc 1982; 41: 2639- 48. Rosling H. In: Cassava toxicity and food security; Rosling H, Ed. Uppasala: Sweden 1978; 3-40. Conn EE. In: Herbivores- their interaction with secondary plant metabolites; Rosenthal GA, Jansen DH, Ed. Academic Press: New York 1979; pp. 271-307. Keeler RF, Vankampen KR, James LF. In: Alkaloid teratogens from Luginus, Conium, Vcranum and related genera; Keeler RF, Van Kampen KR, James LF, Ed. Academic Press: New York; pp. 397-408. Radostits OM, Gay CG, Blood DC, Hinchcliff KW. In: Congenital cardiac defects; Radostits OM, Gay CG, Blood DC, Hinchcliff KW, Ed. WB Saunders: London 2000; pp. 391-4. Baskin SI, Reagor JC. In: Cyanide poisoning; Sidell FR, Takafuji T, Franz DR, Ed. Washington DC 1997; pp. 272-86. Egekeze JO, Oehme FW. Cyanides and their toxicity: a literature review. Tijdschr Diergeneeskd 1980; 105: 104-14. Wiemeyer SN, Hill AF, Carpenter JW, Krynitsky AJ. Acute oral toxicity of sodium cyanide. J Bacteriol 1986; 107: 375-6. Aslani MR, Mohri M, Maleki M, Sharifi K, Mohammadi GR, Chamsaz M. Mass cyanide intoxication in sheep. Vet Hum Toxicol 2004; 46: 186-7. Leduc G. In: Cyanides in water: toxicological significance. Weber LJ. Ed. Raven Press; New York 1984: pp. 153- 224. Tandishabo K, Takahashi A, Nakamura K, Takamizawa K. Characterization of the rhodanese enzyme in Coprothermobacter strains. ISETS07 2007; pp. 1202-3. Ma J, Dasgupta PK. Recent developments in cyanide detection: A review. Anal Chim Acta 2010; 673:117–25. Nagahara N, Li Q, Sawada N. Do antidotes for acute cyanide poisoning act on mercaptopyruvate sulfurtransferase to facilitate detoxification? Curr Drug Targets Immune Endocr Metabol Disord 2003; 3: 198-204. Cipollone R, Ascenzi P, Visca P (2007) Common themes and variations in the rhodanese superfamily. Life 2007; 59: 51-59.
[26]
[27] [28] [29]
[30]
[31]
[32]
[33]
[34] [35]
[36] [37]
[38]
[39] [40]
333
Aminlari M, Li A, Kunanithy Y, Scaman CH. Rhodanese distribution in porcine (Susscrofa) tissues. Comp Biochem Physiol 2002; 132: 309-13. Drawbaugh RB, Marrs TC. Interspecies differences in rhodanese activity in liver, kidney and plasma. Comp Biochem Physiol 1987; 86: 307-10. Hatzfeld Y, Saito K. Evidence for the existence of rhodanese in plants: preliminary characterization of two rhodanese cDNA from Arabidopsis thaliana. Febs Lett 2000; 470:147-50. Nazifi S, Aminlari M, Alaibakhsh MA. Distribution of rhodanese in tissues of goat (Capra hircus). Comp Biochem Physiol 2003; 234: 515-8. Westley J. Rhodanese. Adv Enzymol Relat Area Mol Biol 1973; 39: 327-68. Wood JL. In: Chemistry and biochemistry of thiocyanic acid and its derivatives. Newmann AA, Ed. Academic Press; New York 1975: pp. 156-221. Aminlari M, Malekhhusseini A, Akrami F. Cyanide metabolizing enzyme rhodanese in human tissues: comparison with domestic animals. Comp Clin Pathol 2007; 16: 47-51. Jarabak R, Westley J. Human liver rhodanese: Nonlinear kinetic behaviour. Double displacement mechanism. Biochem 1974; 13: 3233-6. Scott EM, Wright RC. Identity of -mercaptopyruvate sulfurtransferase and rhodanese in human erythrocytes. Biochem Biophys Res Commun 1980; 97: 1334-8. Lang K. Die rhodanbildung in turkorper. Biochem 1933; 259: 24356. Saunders JP, HimwichWA. Enzymatic conversion of cyanide to thiocyanate. Am J Physiol 1948; 153: 348-54. Marrs TC, Ballantyne B. In: Clinical and experimental toxicology of cyanides: an overview. Ballantyne B, Marrs TC, Ed. John Wright; England 1987: pp. 473-95. Ali A, Al-Qarawi, Mousa BH. Tissue and intracellular distribution of rhodanese and mercaptopyruvate sulfurtransferase in ruminants and birds. Vet Res 2000; 32: 63-70. Calabrese EJ. In: Cyanide toxicity. Wiley; New York 1983: pp. 278-81. Lewis JL, Rhoad CE, Bice DE, Harkema JR, Hotchkiss JA, Sylvester DM, Dahl A. Interspecies comparison and cellular localization of the cyanide metabolizing enzyme rhodanese within olfactory mucosa. Anat Rec 1992; 232: 620-7. Baghshani H, Aminlari M. Comparison of rhodanese distribution in different tissues of Japanese quail, partridge, and pigeon. Comp Clin Pathol 2009; 18: 217–20. Shahbazkia HR, Aminlari M, Tanana M. Distribution of the enzyme rhodanese in tissues of the cat. J Fel Med Sur 2009; 11: 305-8. Yi H, Li XH, Yi B, Zheng J, Zhu G, Li C. Identification of Rack 1, EF-Tu and rhodanese as aging- related proteins in human colonic epithelium by proteomic analysis. J Prot Res 2010; 9: 1416-23. Taniguchi E, Matsunami M, Kimura T, Yonezawa D, Ishiki T, Sekiguchi F et al. Rhodanese, but not cystathionine--lyase, is associated with dextran sulfate sodium-evoked colitis in mice. Toxicol 2009; 264: 96-103. Krueger K, Koch K, Juhling A. Low expression of thiosulfate sulfurtransferase (rhodanese) predicts mortality in hemodialysis patients. Clin Biochem 2010; 43: 95-101. Smirnov A, Comte C, Addis V, Martin RP, Entelis N, Tarassov I. Mitochondrial enzyme rhodanese is essential for 5S rRNA import into human mitochondria. J Biol Chem 2010; 285: 30792-803. Atkinson A. Bacterial cyanide detoxification. Biotechnol Bioeng 1975; 17: 457-60. Cipollone R, Bigotti MG, Frangipani E, Ascenzi P, Visca P. Characterization of a rhodanese from the cyanogenic bacterium Pseudomonas aeruginosa. Biochem Biophys Res Commun 2004; 325: 85-90. Witholt SJ, Shankaranarayanan R, Garen CR. Expression, purification, crystallization and preliminary X-ray analysis of Rv3117, a probable thiosulphate sulfurtransferase (CysA3) from Mycobacterium tuberculosis. Acta Cryst 2008; 64: 541–4. Cerletti P. Seeking a better job for an underemployed enzyme: rhodanese. Trends Biochem Sci 1986; 11: 369-72. Bonomi F, Pagani S, Cerletti P, Canella C. Rhodanese mediated sulphurtransferase to succinate dehydrogenase. Eur J Biochem 1977; 72: 17-24.
334 Current Biotechnology, 2012, Volume 1, No. 4 [41] [42]
[43] [44] [45]
[46] [47]
[48]
[49]
[50]
[51]
[52]
[53] [54]
[55]
[56] [57]
[58] [59]
[60] [61]
[62] [63]
Ogata K, Volini M. Mitochondrial rhodanese: membrane bound and complex activity. J Biol Chem 1990; 265: 8087-93. Matthies A, Rajagopalan KV, Mendel RR, Leimkuhler S. Evidence for the physiological role of a rhodanese like protein for the biosynthesis of the molybdenum cofactor in humans. Proc Natl Acad Sci 2004; 101: 5946-51. Nandi Dl, Horowitz PM, Westley J. Rhodanese as thioredoxin oxidase. Int J Biochem Cell Biol 2004; 32: 465-73. Pagani S, Galante YM. Interaction of rhodanese with mitochondrial NADH dehydrogenase. Biochim Biophys Acta 1983; 742: 278-84. Urbina HD, Silberg JJ, Hoff KG, Vickery LE. Transfer of sulphur from IscS to IscU during Fe/S cluster assembly. J Biol Chem 2001; 276: 44521-6. Pagani S, Bonomi F, Cerletti P. Enzyme synthesis of the ironsulphur cluster of spinach ferridoxin. Eur J Biochem 1984; 143: 361-6. Cereda A, Carpen A, Picariello G, Tedeschi G, Pagani S. The lack of rhodanese RhdA affects the sensitivity of Azotobacter vinelandii to oxidative events. Biochem J 2009; 418: 135-43. Ramirez P, Toledo H, Guilani N, Jerez CA. An exported rhodanese-like protein is induced during growth of Acidithiobacillus ferroxidans in metal sulphides and different sulfur compounds. Appl Environ Microbiol 2002; 68: 1837-45. Ogasawara Y, Lacourciere G, Stadtman TC. Formation of a selenium substituted rhodanese by reaction with selenite and glutathione: possible role of a protein perselenide in a selenium delivery system. Proc Natl Acad Sci 2001; 98: 9494-8. Wolfe MD, Ahmed F, Lacourciere GM, Lauhon CT, Stadtman TC, Larson TJ. Functional diversity of the rhodanese homology domain: the E. coli ybbB gene encodes a selenophosphatedependant tRNA 2-selenouridine synthase. J Biol Chem 2004; 279: 1801-9. Dexitra E, Wider A, Sander JD, Davies RC, Neuberger A. Control of 5-amino laevulinatesynthetase activity in R. spheroides. Philos Trans R Soc Lond B Biol Sci 1975; 273:78-98. Vazquez E, Buzaleh AM, Wider E, Alcira MC. Red blood cell rhodanese: its possible role in modulating -amino levulinatesynthetase activity in mammals. Int J Biochem 1987; 19: 217-9. Bergsma J, Hol WGJ, Jansonius JN, Kalk KH, Ploegman JH, Smith JDG. The double domain structure of rhodanese. J Mol Biol 1979; 98: 637-43. Russell J, Weng L, Keim PS, Heinrikson RL. The covalent structure of bovine liver rhodanese: Isolation and partial structural analysis of cyanogen bromide fragments and the complete sequence of the enzyme. J Biol Chem 1978; 253: 8102-8. Smith JDG, Ploegman JH, Pierrot M, Kalk KH, Jansonius JN, Drenth. The structure of rhodanese at 4A resolution: the conformation of the polypeptide chain. Isr J Chem 1974; 12: 287304. Alexander K, Volini M. Properties of an E. coli rhodanese. J Biol Chem 1987; 262: 6595-604. Ploegman JH, Drent G, Kalk KH, Hol WGJ, Heinrikson RL, Keim P, Weng L, Russell J. The covalent and tertiary structure of bovine liver rhodanese. Nature 1978; 273:124-9. Bordo D, Bork P. Therhodanese/ Cdc 25 phosphatase superfamily: Sequence- structure-function relations. EMBO Rep 2002; 3:741-6. Ray WK, Zeng G, Potters MB, Mansuri AM, Larson JJ. Characterization of a 12- kilodalton rhodanese encoded by glpE of E. coli and its interaction with thioredoxin. J Bacteriol 2000; 182: 2277-84. Adams H, Teertstra W, Koster M, Tommassen J. PspE (Phageshock protein E) of E .coli is a rhodanese. FEBS Lett 2002; 518: 173-6. Heidelberg JF, Eisen JA, Nelson WC, Clayton RA, Gwinn ML, Dodson RJ et al. DNA sequence of both chromosomes of the cholera pathogen Vibrio cholerae. Nature 2000; 406: 477-83. Azumi Y, Watanabe A. Evidence for a senescence-associated gene induced by darkness. Plant Physiol 1991; 95: 577-83. Acosta M, Beard S, Ponce J, Vera M, Mobarec JC, Jerez CA. Identification of putative sulfurtransferase genes in the extremophilic Acidithiobacillus ferroxidans ATCC 23270 genome: structural and functional characterization of the proteins. OMICS 2005; 9: 13-29.
Chaudhary and Gupta [64]
[65]
[66]
[67]
[68]
[69]
[70]
[71]
[72] [73]
[74]
[75]
[76] [77]
[78] [79] [80] [81] [82]
[83] [84] [85]
[86] [87]
Yeo HK, Lee JY. Crystal structure of Saccharomyces cerevisiae Ygr203w, a homolog of single-domain rhodanese and Cdc25 phosphatase catalytic domain. Prot. 2009; doi: 10.1002/prot.22420. Giuliani MC, Castelli CJ, Leroy G, Hachani A. Characterization of a new periplasmic single-domain rhodanese encoded by a sulfurregulated gene in a hyperthermophilic bacterium Aquifex aeolicus. Biochimie 2010; 92: 388-97. Fauman EB, Cogswell JP, Lovejoy B, Rocque WJ, Holmes W, Montana VG, Rink MJ, Saper MA. Crystal structure of the catalytic domain of the human cell cycle control phosphatase, Cdc 25A. Cell 1998; 93: 617-25. Hofmann K, Bucher P, Kajava AV. A model of Cdc 25 phosphatase catalytic domain and Cdk-interaction surface based on the presence of a rhodanese homology domain. J Mol Biol 1998; 282: 195-208. Kreis-Kleinschmidt V, Fahrenholz F, Kojro E, Kroger A. Periplasmic sulphide dehydrogenase (Sud) from Wolinella succinogenes: isolation, nucleotide sequence of the sud gene and its expression in E. coli. Eur J Biochem 1995; 227:137-42. Spallarossa A, Forlani F, Carpen A, Armirotti A, Pagani S, Bolognesi M, Bordo D. The ‘rhodanese’ fold and catalytic mechanism of 3-mercaptopyruvate sulfurtransferases: crystal structure of SseA from E. coli. J Mol Biol 2004; 335: 583-93. Cortese MS, CaplanAB, Crawford RL. Structural, functional and evolutionary analysis of moeZ, a gene encoding an enzyme required for the synthesis of the Pseudomonas metabolite, pyridine2,6- bis (thiocarboxylic acid). BMC Evol Biol 2002; 2: 8. Matthies A, Nimtz M, Leimkuhler S. Molybdenum cofactor biosynthesis in humans: identification of a persulfide group in the rhodanese- like domain of MOCS 3 by mass spectrometry. Biochem 2005; 44: 7912-20. Mueller EG, Palenchar PM, Buck CJ. The role of the cysteine residues of ThiI in the generation of 4-thiouridine in tRNA. J Biol Chem 2001; 276: 33588-95. Martinez-Gomez NC, Palmer LD, Vivas E, Roach PL, Downs DM. The Rhodanese domain of ThiI is both necessary and sufficient for synthesis of the thiazole moiety of thiamine in Salmonella enterica. J Bacteriol 2011; 193: 4582-7. Mc Cain DF, Catrina IE, Hengge AC, Zhang ZY. The catalytic mechanism of Cdc 25A phosphatase. J Biol Chem 2002; 277: 11190-2200. Hanzelmann P, Dahl JU, Kuper J, Urban A, Muller U, Schindelin H. Crystal structure of YnjE from Escherichia coli, a sulfurtransferase with three rhodanese domains. Prot Sc 2009; 18:2480-91. Gliubich F, Gazerro M, Zanotti G, Delbono S, Bombieri G, Berni R. Active site structural features for chemically modified forms of rhodanese. J BiolChem 1996; 271: 21054–61. Koloczek H, Vanderkool JM. Domain structural flexibility in rhodanese examined by quenching of phosphorescent probe. Biochim Biophys Acta 1987; 916: 236-44. Wang SF, Volini M. Studies on the active site of rhodanese. J Biol Chem 1968; 243: 5465-70. Bhattacharyya AM, Horowitz M. Alteration around the active site of rhodanese during urea induced denaturation and its implications for folding. J Biol Chem 2000; 275: 14860-4. Mintel R, Westley J. The rhodanese reaction: Mechanism of thiosulfate binding. J Biol Chem 1966; 241: 3386-9. Davidson B, Westley J. Tryptophan in the active site of rhodanese. J Biol Chem 1965; 240: 4463-9. Lehninger KR, Westley J (1968) The mechanism of rhodanese catalyzed thiosulphate- cyanide reaction: Thermodynamic and activation parameters. J Biol Chem 243:1892-1899 Jarabak R, Westley J. Human liver rhodanese: Nonlinear kinetic behaviour. Double displacement mechanism. Biochem 1974; 13: 3233-6. Volini M, Wang SF. Conformational stabilization of enzymes in covalent catalysis. Arch Biochem Biophys 1978; 187: 163-9. Baskin SI, Kirby SD. The effect of sodium tetrathionate on cyanide conversion to thiocyanate by enzymatic and non-enzymatic mechanism. J Appl Toxicol 1990; 10: 379-82. Markku L, Juhani V, Jari H. Spectrophotometric determination of thiocyanate in human salive. J Chem Educ 1999; 76: 1281-2. Sorbo BH. Crystalline rhodanese (II). Enzyme catalyzed reaction. Acta Chem Scand 1953; 7: 1137-45.
Cyanide Detoxifying Enzyme: Rhodanese [88] [89] [90] [91]
[92]
Current Biotechnology, 2012, Volume 1, No. 4
Lieberei R, Selmar D. Determination of rhodanese in plants. Phytochem 1990; 29: 1421-4. Singleton DR, Smith D. Improved assay of rhodanese in Thiobacillus sp. Appl Environ Microbiol 1988; 54: 2866-7. Tabatabai MA, Singh BB. Rhodanese activity of soils. Soil Sci Soc Am J 1976; 40: 381-5. Guilbaut GG, Kuan SS, Cochran R. Procedure for rapid and sensitive detection of rhodanese separated by polyacrylamide gel electrophoresis. Anal Biochem 1971; 43: 42-7. Llenado RA, Rechnitz GA. Rhodanese enzyme determination using Ion-selective membrane electrodes. Anal Chem 1972; 44: 1366-70.
Received: June 4, 2012
[93]
[94] [95] [96]
335
Silver M, Howarth OW, Kelly DP. Rhodanese from Thiobacillus A2: Determination of activity by Proton Nuclear Magnetic Resonance Spectroscopy. J Gen Microbiol 1976; 97: 285-8. Lanyi B. Rhodanese activity: A simple and reliable taxonomic tool for gram negative bacteria. J Med Microbiol 1982; 15: 263-6. Cannella C, Bemardo P, Pecci L. Determination of rhodanese activity using pH-STAT apparatus. Anal Biochem 1975; 68: 45864. Cannella C, Berni R, Ricci G. Determination of rhodanese activity by tetrazolium reduction. Anal Biochem 1984; 142: 159-62.
Revised: August 23, 2012
Accepted: August 23, 2012