Figure S7. - Plos

0 downloads 0 Views 284KB Size Report
PIR 1 Pithecia irrorata. PPT 1 Pithecia pithecia. CBS 1 Callicebus brunneus ... PNL 1 Pygathrix nigripes. RBR 1 Rhinopithecus brelichi. SEE 1 Semnopithecus ...
Majority-rule consensus tree

ML Bootstrap phylogeny using intron data partition 100 100

100

100

100

95 100

97

98

100

100

100

100

100

100

100

53

100

100 100

95

100

100 100

100

100

59

99

100 100 100

95

100

100

100

59

82

99 88

100

100

100 100

100

100

100

54

100

100

100

100

100

100

97

93 100

100 92

100

98

100

52 99 80

100 100 100 100 100 73 96 100

94

100

100 100

100 100

98

99

98

100

100

100

100

100

100

97

100

100

100

76

97

100

100

56

100

100

76

100

69

100

100

52

99

100

100

75 100

100

100

70

95

100 100

100

100 100

97

99

78

63 100 88

100

100

100

63 93

100

100

63

81

55

95

100

100

69

100

81

100

100

100

100 51

100

100

100

100

100

72

100

100

71 100

100

67

100 100 74

100

100

100 100

98

93 56

100

99

100

87

100

100

86

84

100

100

100

100

57

ABE 1 Alouatta belzebul ACA 3 Alouatta caraya ASA 1 Alouatta sara APL 1 Alouatta palliata ABZ 1 Ateles belzebuth AGO 2 Ateles geoffroyi AFC 7 Ateles fusciceps AHY 1 Ateles hybridus ACM 1 Ateles chamek APC 1 Ateles paniscus BAR 1 Brachyteles arachnoides BHY 1 Brachyteles hypoxanthus LAC 2 Lagothrix cana LLG 1 Lagothrix lagotricha ALM 1 Aotus lemurinus griseimembra ATR 1 Aotus trivirgatus ANA 1 Aotus nancymaae AZA 1 Aotus azarae AZB 1 Aotus azarae boliviensis AZI 1 Aotus azarae infulatus CAI 1 Callithrix aurita CGE 4 Callithrix geoffroyi CJA 1 Callithrix jacchus CKU 1 Callithrix kuhlii CPE 10 Callithrix penicillata CAR 1 Mico argentata MHU 1 Mico humeralifer CPY 5 Cebuella pygmaea CGO 1 Callimico goeldii LCH 1 Leontopithecus chrysomelas LRO 244 Leontopithecus rosalia SBI 1 Saguinus bicolor SSI 1 Saguinus martinsi SMD 1 Saguinus midas SFU 6 Saguinus fuscicollis SGE 3 Saguinus geoffroyi SOE 3 Saguinus oedipus SIM 2 Saguinus imperator SLA 1 Saguinus labiatus SMY 3 Saguinus mystax CAP 13 Cebus apella CXA 1 Cebus xanthosternos CRO 1 Cebus robustus CCP 3 Cebus capucinus COV 1 Cebus olivaceus CEA 1 Cebus albifrons SAU 1 Saimiri ustus SOO 1 Saimiri oerstedii oerstedii SSC 7 Saimiri sciureus SBO 3 Saimiri boliviensis boliviensis CAM 1 Cacajao melanocephalus CCL 1 Cacajao calvus CIS 1 Chiropotes israelita CSA 2 Chiropotes satanas chiropotes PIR 1 Pithecia irrorata PPT 1 Pithecia pithecia CBS 1 Callicebus brunneus CCU 2 Callicebus cupreus CMH 1 Callicebus moloch CCG 1 Callicebus caligatus CDO 1 Callicebus donacophilus CCO 1 Callicebus coimbrai CLP 1 Callicebus personatus CNI 1 Callicebus nigrifrons ANI 1 Allenopithecus nigroviridis CAE 4 Chlorocebus cynosuros CAE 8 Chlorocebus aethiops CSB 1 Chlorocebus sabaeus CIH 1 Cercopithecus lhoesti EPA 9 Erythrocebus patas CAB 1 Cercopithecus albogularis kolbi CMT 1 Cercopithecus mitis CAS 1 Cercopithecus ascanius schmidti CCE 1 Cercopithecus cephus CPP 1 Cercopithecus petaurista petaurista CDA 3 Cercopithecus diana CHH 1 Cercopithecus hamlyni hamlyni CNE 1 Cercopithecus neglectus CWW 1 Cercopithecus wolfi wolfi CMO 2 Cercopithecus mona MOG 1 Miopithecus ogouensis CAC 1 Cercocebus agilis CCY 1 Cercocebus chrysogaster CTR 1 Cercocebus torquatus MLE 2 Mandrillus leucophaeus MSP 12 Mandrillus sphinx LAA 1 Lophocebus albigena LAT 2 Lophocebus aterrimus PAN 10 Papio anubis PHM 1 Papio hamadryas PPP 2 Papio papio TGE 2 Theropithecus gelada MAC 1 Macaca arctoides MTH 3 Macaca thibetana MCY 3 Macaca cyclopis MFS 2 Macaca fuscata MMA 14 Macaca mulatta MFA 18 Macaca fascicularis MCA 1 Macaca maura MNG 3 Macaca nigra MOC 1 Macaca orchreata MTO 6 Macaca tonkeana MNE 5 Macaca nemestrina MSI 7 Macaca silenus MSE 1 Macaca siberu MSY 3 Macaca sylvanus CAN 1 Colobus angolensis palliatus CGU 7 Colobus guereza CPO 2 Colobus polykomos PBD 1 Piliocolobus badius NLA 2 Nasalis larvatus PCN 2 Pygathrix cinerea PNE 2 Pygathrix nemaeus PNI 1 Pygathrix nigripes RBR 1 Rhinopithecus brelichi SEE 1 Semnopithecus entellus entellus SEF 2 Semnopithecus entellus SHE 1 Semnopithecus hector TVV 2 Trachypithecus vetulus monticola TAU 1 Trachypithecus auratus TOB 4 Trachypithecus obscurus TPH 1 Trachypithecus phayrei TDE 1 Trachypithecus delacouri TFR 1 Trachypithecus francoisi THA 1 Trachypithecus hatinhensis PCM 1 Presbytis comata PME 2 Presbytis melalophos GGO 9 Gorilla gorilla HSA 34 Homo sapiens PPN 8 Pan paniscus PTR 104 Pan troglodytes verus PTR 60 Pan troglodytes troglodytes PPY 155 Pongo abelii PPY 157 Pongo pygmaeus HAG 6 Hylobates agilis HLA 1 Hylobates lar HMU 6 Hylobates muelleri HCO 3 Nomascus leucogenys NSI 1 Nomascus siki NCN 2 Nomascus concolor NGA 2 Nomascus gabriellae SSY 2 Symphalangus syndactylus TBA 1 Tarsius bancanus TSY 1 Tarsius syrichta ACL 1 Arctocebus calabarensis PEP 2 Perodicticus potto LTA 2 Loris tardigradus NBE 1 Nycticebus bengalensis NCO 2 Nycticebus coucang NPY 1 Nycticebus pygmaeus GGR 2 Otolemur garnettii OCR 1 Otolemur crassicaudatus GMO 4 Galago moholi GSE 1 Galago senegalensis GTH 1 Galago thomasi ALN 1 Avahi laniger PDI 2 Propithecus diadema PED 1 Propithecus edwardsi PTA 1 Propithecus tattersalli PVC 2 Propithecus verreauxi coquereli PVE 1 Propithecus verreauxi EFL 4 Eulemur fulvus EFL 7 Eulemur albifrons EFL 16 Eulemur sanfordi ERF 1 Eulemur rufus EFL 15 Eulemur collaris EMO 1 Eulemur mongoz EMC 1 Eulemur macaco EMC 5 Eulemur macaco flavifrons ECR 2 Eulemur coronatus ERB 4 Eulemur rubriventer HGR 1 Hapalemur griseus HOC 1 Hapalemur occidentalis LCT 10 Lemur catta VVA 2 Varecia variegata variegata VVA 7 Varecia variegata rubra CMD 1 Cheirogaleus medius CMI 3 Microcebus murinus subspecies 2 MMR 2 Microcebus murinus subspecies 1 MCE 1 Mirza zaza LAN 1 Lepilemur ankaranensis LDO 1 Lepilemur dorsalis LSP 1 Lepilemur septentrionalis LER 1 Lepilemur ruficaudatus LJA 1 Lepilemur jamesi DMD 5 Daubentonia madagascariensis CVA 5 Cynocephalus variegatus CVO 1 Cynocephalus volans TGL 4 Tupaia glis TMI 1 Tupaia minor rabbit rabbit