Genome YP YE PM AA HI HD VV VP VC VF Operon ... - BioMed Central

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VP. VC. VF. Operon. Regulatory sites. Lytic murein transglycosylase. mltA. --N. --N. ---. ---. ---. -a-. ---. fA-. fA-. -A-. Metabolism of nucleotides. pyrG. ---. ---. F--. ---.
Genome Operon

YP

YE

PM

AA

HI

HD

VV

VP

VC

VF

Regulatory sites Lytic murein transglycosylase mltA

--N

--N

---

---

---

-a-

---

fA-

fA-

-A-

Fa---

F----

F----

F----

Fa---

-A-A-

---A-

fAn -A-

fAfA-

-A-

fA-

fAn

-A-

0 -A-

0 -A-

0 ---

Metabolism of nucleotides pyrG ndk

---A-

---A-

F--A-

---A-

F--A-

Transport nhaB-dsbB yhdWXYZ #

#

-A-

brnQ mtr

0 -----

yhjX

0

fA--n

-A-

-A-

f--

fA-

--f--

0 ----N

0 -----

0 -afaN

0 -a-aN

---

0

0

0

-a-

0 -A-

-A-

-A-

fA-

-A-

-A-

---

---

f--

-an

f--

f--aN

fAfa-

FA---

-----

FAn ---

FAf--

Heat shock shaperones dnaKJ

FA-

FA-

fA-

-A-

--n

Peptidyl-prolyl cis-trans isomerase fkpA

#

fadR gcvA

#

---

---

f-N

-A--n

fA---

-A--N

0 ---

0 ---

--N

--N

Transcription regulators

torR # sgrR

-A--N

0

0

0

0

Fa-

F-n

Fa-

F--

0

0

0

0

--N

f-N

f-N

---

Metabolism of folates and one-carbon compounds yjjPB-folA

--n

glyA

---

13a

----n

13a

f-N 13a

--N 13a

f-N 13a

--N 13b

--- 13a

-a- 13a

-an 13a

f-- 13a

-a-

--n

---

0

FA-

FA-

FA-

F--

-A-

-A-

-A-

-A-

Heme metabolism hemE

fa-

---

---

fa-

0

0

Genes for sulfur metabolism

1

cysJIH

---

---

argD aroH

----n

---a-

0

0

0

0

--N

--N

---

--N

---

-A-A-

-A-A-

fA-A-

fA-A-

Metabolism of aminoacids --0

0 0

0 0

0

Biotin metabolism bioABFCD

F-F--

14a 14b

F-F--

14a 14b

14c

-a--- 14d F-- 14e

--N f-F--

14c 14d 14e

--N --Fa-

14c 14d 14e

f-N -aFan

14c 14d 14e

f-f--

14a 14b

f-f--

14a 14b

-----

14a 14b

-----

14a 14b

DNA repair VV12876-75-74-tag

---

15a

---

15a

-A-

15a

fA-

15a

-A-

15a

15b

15b

15b

0

-A-

0 -A-

0 -a-

f----

f--a-

0 ---

fa-

-A-

fA-

fA-

-A-

-An

-A-

-A-

15b

Colicin transpot system ompW tolB-pal-ybgF

F-N -A-

F-N fA-

faf--

-an -A-

0 -An

RNA helicase srmB

---

---

---

---

---

Unknown function VV12099 mrp yfiO

0 F-F--

0 F-F--

0 -----

0 --N ---

0 f-N ---

0 f-N -a-

F-N ---A-

F-N -----

Faf-fA-

FaN f--A-

yhbUV VV12702 #

fa-

---

0 -a-

0 f--

0 0 ---

0 0

0 0

0 0

--N -A-

--N -A-

--N -A-

--N fA-

-A-

fA-

---

---

0 -a-

-A-

---

0 ---

-A-

yfiC VV10415

0 ---

0

0

0

0

0

0

-A-A-

fA-A-

fAn fA-

-A-A-

VV11834 slyX #

0 ---

0 ---

0 --N

0 --N

0 --N

0 ---

fA---

-Af--

fA-a-

-A-

yhjA

f--

-an

f-n

F--

-A-

---

0 -A-

F--

f--

0 -A-

F--

slyB VV12768-67-66-65

0 -a-

0

0

0 f-0

0 --0

---A-

0 -A-

0 0

0 --0

---A-

0 0

0 --0

-A-A-

-A-An

-An -A-

yjcE #

VV12695 VV20742

0 -a0 0 --0

2

VV12832 VV12996

0 0

0 0

0 -a-

0 ---

0 ---

0 0

-An -A-

-A---

-A-A-

0 fA-

VV11084

0

0

0

0

0

0

-A-

-A-

-A-

0

3