HAF[IE]

Organism

Length

GI

Taxonomy

alpha proteobacterium HTCC2255

357 114773289 a

Bacteroides thetaiotaomicron VPI-5482 Bacteroides fragilis YCH46 Cytophaga hutchinsonii ATCC 33406 Gramella forsetii KT0803 Croceibacter atlanticus HTCC2559 Cellulophaga sp. MED134 Tenacibaculum sp. MED152 Flavobacterium sp. MED217 Flavobacteriales bacterium HTCC2170 Polaribacter irgensii 23-P Robiginitalea biformata HTCC2501 Flavobacteria bacterium BBFL7 Flavobacterium johnsoniae UW101 Psychroflexus torquis ATCC 700755 Microscilla marina ATCC 23134 Algoriphagus sp. PR1 Flavobacteria bacterium BAL38 Campylobacter lari RM2100 Campylobacter upsaliensis RM3195 Campylobacter coli RM2228 Photorhabdus luminescens subsp. laumondii TTO1 Yersinia enterocolitica subsp. enterocolitica 8081 Shewanella baltica OS155 Shewanella loihica PV-4 Erwinia carotovora subsp. atroseptica SCRI1043 Yersinia pseudotuberculosis IP 32953 Mannheimia succiniciproducens MBEL55E Legionella pneumophila subsp. pneumophila str. Phila Legionella pneumophila str. Paris Legionella pneumophila str. Lens Photobacterium profundum SS9 Idiomarina loihiensis L2TR Xanthomonas oryzae pv. oryzae KACC10331 Vibrio fischeri ES114 Colwellia psychrerythraea 34H Candidatus Blochmannia pennsylvanicus str. BPEN Shigella sonnei Ss046 Pseudoalteromonas haloplanktis TAC125 Shigella dysenteriae Sd197 Shigella boydii Sb227 Sodalis glossinidius str. 'morsitans' Shewanella denitrificans OS217 Baumannia cicadellinicola str. Hc (Homalodisca coagu Pseudoalteromonas atlantica T6c Shewanella sp. MR-4 Shewanella sp. MR-7 Shewanella frigidimarina NCIMB 400 Aeromonas hydrophila subsp. hydrophila ATCC 7966 Shewanella sp. ANA-3 Shewanella amazonensis SB2B Psychromonas ingrahamii 37 Shewanella sp. W3-18-1 Actinobacillus pleuropneumoniae serovar 1 str. 4074 Shigella boydii BS512 Actinobacillus succinogenes 130Z Shewanella putrefaciens CN-32 Yersinia bercovieri ATCC 43970 Yersinia mollaretii ATCC 43969 Yersinia frederiksenii ATCC 33641 Yersinia intermedia ATCC 29909 Shigella dysenteriae 1012 Vibrio splendidus 12B01 Idiomarina baltica OS145 Vibrio sp. MED222 Alteromonas macleodii 'Deep ecotype' Pseudoalteromonas tunicata D2 Photobacterium sp. SKA34 Psychromonas sp. CNPT3 Photobacterium profundum 3TCK Vibrio angustum S14 Vibrio alginolyticus 12G01 Shewanella baltica OS195 Vibrio sp. Ex25 Yersinia pseudotuberculosis IP 31758 Serratia proteamaculans 568 Shewanella woodyi ATCC 51908 Enterobacter sp. 638 Shewanella pealeana ATCC 700345 Alteromonadales bacterium TW-7 Stenotrophomonas maltophilia R551-3

374 374 372 379 377 378 379 385 377 378 388 369 378 377 373 365 379 355 352 353 355 355 363 356 355 355 365 352 352 352 361 358 375 357 361 356 356 353 356 355 355 355 356 358 363 363 355 383 363 355 356 363 363 355 364 363 355 355 355 355 355 362 358 362 356 353 356 356 361 356 357 363 357 355 355 359 355 364 353 357

29345613 53714474 110637675 120436112 83858108 86130227 86133445 86143306 88712457 88802980 88805687 89891713 90592003 91217706 124006022 126645652 126664303 57241587 57242505 57504889 37525515 123442984 126174641 127513128 50121509 51595896 52425945 52841430 54297154 54294141 54308282 56460937 58581881 59711622 71282446 71892239 74312565 77362400 82777446 82543399 85059105 91792971 94676488 109899190 113970135 114047675 114562892 117618028 117920296 119775079 119945366 120598644 53729148 75177149 75429723 77815195 77959284 77962462 77975877 77978866 83571264 84391744 85712681 86147092 88794032 88857348 89075755 90407647 90411636 90580090 91226028 113950503 116183729 117673997 118067988 118074420 118739614 118757732 119470924 119879014

CFB CFB CFB CFB CFB CFB CFB CFB CFB CFB CFB CFB CFB CFB CFB CFB CFB e e e g g g g g g g g g g g g g g g g g g g g g g g g g g g g g g g g g g g g g g g g g g g g g g g g g g g g g g g g g g g g

Gene organization§ Genome Status G*XG**DC[NB]HAF[IE]---BHAFI--ZG***---additional copies unfinished (scattered) GDC[NB]---HAF[IE] finished GDC[NB]---HAF[IE] finished GD---C[NB]HAF---I finished GDC[NB]HAF[IE] finished GDCX[NB]HAF[IE] unfinished GDC[NB]HA---?? unfinished G1G2C[NB]HAF[IE] unfinished GDC[NB]HAXF[IE] unfinished GDC[NB]HXAFXX[IE] unfinished GDC[NB]HAFX[IE] unfinished GDC[NB]HAXF[IE] unfinished GDC[NB]HAXF[IE] unfinished GDC[NB]HAF[IE] unfinished GDC[NB]HAF[IE] unfinished GDC[NB]---HA--I--E unfinished GDC[NB]---HAF[IE] unfinished GD1---D2C1C2[NB]HAF[IE] unfinished GD[NB]HAF[IE] unfinished GD[NB]XXHAXFX[IE] unfinished GD[NB]HAF[IE] unfinished GDC[NB]HAF[IE] finished GDC[NB]HAF[IE] finished GDC[NB]HAF[IE] finished GDC[NB]HAF[IE] finished GDC[NB]HAF[IE] finished GDC[NB]HAF[IE] finished GDC[NB]XXXXHXAF[IE] finished GDC[NB]HAF[IE] finished GDC[NB]HAF[IE] finished GDC[NB]HAF[IE] finished GDC[NB]HAF[IE] finished GDC[NB]HAF[IE] finished GDC[NB]HAF[IE] finished GDC[NB]HAF[IE] finished GDC[NB]HAF[IE] finished GDC[NB]HAF[IE] finished GDC[NB]HAF[IE] finished GDC[NB]HAXXXXXF[IE] finished GDC[NB]HAF[IE] finished GDC[NB]HAF[IE] finished GDC[NB]HAF[IE] finished GDC[NB]HAF[IE] finished GDC[NB]HAF[IE] finished GDC[NB]HAFX[IE] finished GDC[NB]HAF[IE] finished GDC[NB]HAF[IE] finished GDC[NB]HAF[IE] finished GDC[NB]HAXXXF[IE] finished GDC[NB]HAF[IE] finished GDC[NB]HAF[IE] finished GDC[NB]HAXXXXF[IE] finished GDC[NB]HAF[IE] finished GDCX[NB]XHAF[IE] unfinished GDC[NB]HAF[IE] unfinished GDCX[NB]XH---A---F[IE] unfinished GDC[NB]HAF[IE] unfinished GDC[NB]HAF[IE] unfinished GDC[NB]HAF[IE] unfinished GDC[NB]HAF[IE] unfinished GDC[NB]HAF[IE] unfinished GDC[NB]HAF[IE] unfinished GDC[NB]HAF[IE] unfinished GDC[NB]HAF[IE] unfinished GDC[NB]HAF[IE] unfinished GDC[NB]HAF[IE] unfinished GDC[NB]HAFX[IE] unfinished GDC[NB]HAF[IE] unfinished GDC[NB]HAF[IE] unfinished GDC[NB]HAF[IE] unfinished GDC[NB]HAF[IE] unfinished GDC[NB]HAF[IE] unfinished GDC[NB]HAF[IE] unfinished GDC[NB]HAF[IE] unfinished GDC[NB]HAF[IE] unfinished GDC[NB]HAF[IE] unfinished GDC[NB]HAXXXXF[IE] unfinished GDC[NB]HAF[IE] unfinished GDC[NB]HAF[IE] unfinished GDC[NB]HAF[IE] unfinished GDC[NB]HAF[IE] unfinished

§ --- indicates a large (>10kb) separation between genes or gene clusters, X indicates a non his genes * fragment? Only 167 residues vs average HisG >200 ** long or E. coli type, it is autonomously feedback inhibited *** short type (requires HisZ for feedback inhibition and proper functioning)