Reverse Transcriptase - MEDS: Maximum likelihood ... - PLOS

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Reverse Transcriptase - MEDS: Maximum likelihood parameter values for the test for episodic directional selection. Site AA. Lalt p. ωT. βF. βB α. Lnull. βF null.
Reverse Transcriptase - MEDS: Maximum likelihood parameter values for the test for episodic directional selection Site 41 64 98 100 103 104 116 151 151 165 181 184 188 188 190 215 215 228 230 286

AA L K S I N Y Y M Q L I V L Y S F T R L A

Lalt -51.926 -73.5638 -158.942 -148.112 -279.906 -105.077 -99.5475 -94.5339 -105.882 -94.7785 -128.417 -155.372 -53.051 -56.0418 -159.906 -126.15 -124.192 -141.874 -20.3123 -101.909

p 0.000129449 0.000122162 0.000244148 1.14E-08 0 0.000121947 0.000159688 9.65E-11 1.18E-05 2.48E-06 3.15E-10 0 5.18E-08 1.15E-06 4.44E-13 0.000141025 1.79E-05 1.46E-05 0.00014829 4.23E-05

!T 1936.984496 11.9947761 999999 2576.319588 629.9148265 199999 1287.659794 199999 13.96804323 166665.6667 2221.222222 25.82331483 377.9314134 17.61330852 75.85213649 160.6553508 15.18961274 72.20644217 308.9814011 20832.33333

F

0.00251767 28.0258 6.92E-06 0.00950148 0.42715 0.26106 0.00537767 1.37238 59.045 0.00075301 3.21155 1.35934 1.80625 574.455 1.67995 1.08574 24.8512 0.276463 0.0152005 0.00123901

B

0.0421996 0.163148 0.499682 0 0.159333 0.158995 0 0 0 0.456091 0.0439401 0.0415552 0 0 0.0290578 0.185441 0.185635 0.0665712 0 1.42472

↵ 3.62273 0.144539 0.351024 1.56231 1.45947 2.05124 4.35354 0.931292 0.911675 0.085129 3.31344 4.39214 0.17763 1.32E-15 1.51613 0.437698 0.437508 1.5965 3.52E-14 0.366754

Lnull -59.2509 -80.9434 -165.67 -164.402 -467.417 -112.458 -106.675 -115.479 -115.479 -105.87 -148.207 -203.578 -67.8746 -67.8746 -186.126 -133.394 -133.394 -151.271 -27.5092 -110.292

F null

0.42699 1.2216 0.395184 3.27566 36.6318 0.54364 0.646434 2.67459 2.67459 0.46651 4.42602 8.42545 3.00599 3.00599 3.4167 1.50103 1.50103 1.29717 0.427747 2.85736

B null

0.0421975 0.180671 0.519358 0 0.159454 0.158985 0 0 0 0.444944 0.0437376 0.0416161 0 0 0.0290576 0.185461 0.185461 0.0664674 0 1.53698

↵null 3.55972 0.144415 0.351024 1.56068 1.46635 2.04216 4.35297 0.928198 0.928198 0.0850503 3.31536 3.35E-14 0.177534 0.177534 1.515 0.437692 0.437692 1.53164 9.96E-15 0.366759

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