Supplementary Figure 1. Heatmap of potential ...

Supplementary Figure 1. Heatmap of potential pathogens identified by MEGAN using NCBI-NT from shotgun reads. Detected bacteria are shown in grey, which refers to reads higher than 0.001%. Undetected bacteria are shown in white. The results may contain false positives.

HKU_A HKU_B HKU_C HKU_D HKU_E HKU_F HKU_G HKU_H HKU_I HKU_J

Porphyromonas asaccharolytica Porphyromonas gingivalis Prevotella dentalis Prevotella denticola Prevotella intermedia Prevotella melaninogenica Proteus mirabilis Providencia rettgeri Providencia stuartii Pseudomonas aeruginosa Pseudomonas alcaligenes Pseudomonas chlororaphis Pseudomonas fluorescens Pseudomonas mendocina Pseudomonas monteilii Pseudomonas mosselii Pseudomonas oryzihabitans Pseudomonas pseudoalcaligenes Pseudomonas putida Pseudomonas stutzeri Rahnella aquatilis Ralstonia insidiosa Ralstonia mannitolilytica Ralstonia pickettii Raoultella ornithinolytica Rhodococcus equi Rickettsia australis Rickettsia felis Rickettsia prowazekii Rickettsia typhi Roseomonas gilardii Rothia dentocariosa Rothia mucilaginosa Salmonella bongori Salmonella enterica Selenomonas sputigena Serratia fonticola Serratia liquefaciens Serratia marcescens Serratia plymuthica Serratia proteamaculans Shewanella putrefaciens Simkania negevensis Sphingomonas paucimobilis Staphylococcus aureus Staphylococcus capitis Staphylococcus epidermidis Staphylococcus equorum Staphylococcus haemolyticus Staphylococcus lugdunensis Staphylococcus saprophyticus Staphylococcus schleiferi Staphylococcus simulans Staphylococcus xylosus Stenotrophomonas maltophilia Streptococcus agalactiae Streptococcus constellatus Streptococcus cristatus Streptococcus dysgalactiae Streptococcus equi Streptococcus equinus Streptococcus gordonii Streptococcus infantarius Streptococcus mitis Streptococcus parasanguinis Streptococcus pasteurianus Streptococcus pneumoniae Streptococcus pyogenes Streptococcus salivarius Streptococcus suis Streptomyces albus Streptomyces griseus Tannerella forsythia Treponema putidum Trueperella pyogenes Tsukamurella paurometabola Veillonella parvula Vibrio alginolyticus Vibrio cholerae Vibrio fluvialis Vibrio furnissii Vibrio harveyi Vibrio mimicus Vibrio parahaemolyticus Vibrio vulnificus Weeksella virosa Xanthomonas campestris Yersinia aldovae Yersinia enterocolitica Yersinia intermedia Yersinia kristensenii Yersinia pestis Yersinia pseudotuberculosis Yersinia rohdei HKU_A HKU_B HKU_C HKU_D HKU_E HKU_F HKU_G HKU_H HKU_I HKU_J

Hafnia alvei Helicobacter cinaedi Helicobacter heilmannii Helicobacter pylori Herbaspirillum huttiense Kingella kingae Klebsiella oxytoca Klebsiella pneumoniae Klebsiella variicola Kluyvera intermedia Kytococcus sedentarius Lactobacillus acidophilus Lactobacillus brevis Lactobacillus casei Lactobacillus crispatus Lactobacillus paracasei Lactobacillus paraplantarum Lactobacillus plantarum Lactobacillus rhamnosus Lactococcus garvieae Lactococcus lactis Leclercia adecarboxylata Legionella hackeliae Legionella longbeachae Legionella oakridgensis Legionella pneumophila Lelliottia amnigena Leptospira biflexa Leptospira borgpetersenii Leptospira interrogans Leptospira santarosai Leptotrichia buccalis Leuconostoc citreum Listeria ivanovii Listeria monocytogenes Listeria seeligeri Megasphaera elsdenii Mesorhizobium amorphae Methylobacterium extorquens Microbacterium paraoxydans Micrococcus luteus Mobiluncus curtisii Moraxella catarrhalis Moraxella osloensis Morganella morganii Mycobacterium abscessus Mycobacterium aurum Mycobacterium avium Mycobacterium chelonae Mycobacterium chimaera Mycobacterium chubuense Mycobacterium fortuitum Mycobacterium goodii Mycobacterium haemophilum Mycobacterium immunogenum Mycobacterium intracellulare Mycobacterium kansasii Mycobacterium leprae Mycobacterium marinum Mycobacterium simiae Mycobacterium smegmatis Mycobacterium tuberculosis Mycobacterium ulcerans Mycobacterium vaccae Mycoplasma hominis Mycoplasma penetrans Myroides odoratimimus Neisseria elongata Neisseria gonorrhoeae Neisseria lactamica Neisseria meningitidis Neisseria weaveri Nocardia brasiliensis Nocardia cyriacigeorgica Nocardia farcinica Nocardia nova Nocardiopsis dassonvillei Ochrobactrum anthropi Odoribacter splanchnicus Olsenella uli Orientia tsutsugamushi Paenibacillus polymyxa Pannonibacter phragmitetus Pantoea agglomerans Pantoea ananatis Parabacteroides distasonis Parachlamydia acanthamoebae Parvimonas micra Pasteurella multocida Pediococcus acidilactici Pediococcus pentosaceus Photobacterium damselae Photorhabdus luminescens Plesiomonas shigelloides HKU_A HKU_B HKU_C HKU_D HKU_E HKU_F HKU_G HKU_H HKU_I HKU_J

Burkholderia thailandensis Burkholderia ubonensis Burkholderia vietnamiensis Buttiauxella agrestis Butyrivibrio fibrisolvens Campylobacter coli Campylobacter curvus Campylobacter gracilis Campylobacter hyointestinalis Campylobacter jejuni Campylobacter lari Campylobacter ureolyticus Capnocytophaga canimorsus Capnocytophaga haemolytica Capnocytophaga ochracea Cedecea neteri Chromobacterium violaceum Citrobacter amalonaticus Citrobacter freundii Citrobacter koseri Citrobacter murliniae Citrobacter rodentium Clostridium baratii Clostridium beijerinckii Clostridium botulinum Clostridium butyricum Clostridium novyi Clostridium perfringens Comamonas terrigena Comamonas testosteroni Corynebacterium argentoratense Corynebacterium atypicum Corynebacterium aurimucosum Corynebacterium diphtheriae Corynebacterium falsenii Corynebacterium imitans Corynebacterium jeikeium Corynebacterium kroppenstedtii Corynebacterium kutscheri Corynebacterium mycetoides Corynebacterium pseudotuberculosis Corynebacterium resistens Corynebacterium riegelii Corynebacterium singulare Corynebacterium ulcerans Corynebacterium urealyticum Corynebacterium vitaeruminis Coxiella burnetii Cryptobacterium curtum Cupriavidus gilardii Cupriavidus taiwanensis Delftia acidovorans Desulfomicrobium orale Desulfovibrio desulfuricans Desulfovibrio fairfieldensis Desulfovibrio piger Desulfovibrio vulgaris Dialister pneumosintes Dichelobacter nodosus Edwardsiella hoshinae Edwardsiella ictaluri Edwardsiella tarda Eggerthella lenta Ehrlichia canis Ehrlichia chaffeensis Eikenella corrodens Enterobacter asburiae Enterobacter cloacae Enterobacter hormaechei Enterobacter kobei Enterobacter ludwigii Enterococcus casseliflavus Enterococcus cecorum Enterococcus durans Enterococcus faecalis Enterococcus faecium Enterococcus mundtii Escherichia albertii Escherichia coli Escherichia fergusonii Eubacterium limosum Ewingella americana Faecalibacterium prausnitzii Filifactor alocis Francisella philomiragia Francisella tularensis Gallibacterium anatis Gardnerella vaginalis Gordonia bronchialis Gordonia polyisoprenivorans Gordonia terrae Grimontia hollisae Haemophilus influenzae Haemophilus parainfluenzae HKU_A HKU_B HKU_C HKU_D HKU_E HKU_F HKU_G HKU_H HKU_I HKU_J

[Clostridium] sphenoides [Eubacterium] sulci Achromobacter denitrificans Achromobacter insolitus Achromobacter ruhlandii Achromobacter xylosoxidans Acidaminococcus fermentans Acidovorax avenae Acidovorax delafieldii Acidovorax facilis Acidovorax temperans Acinetobacter baumannii Acinetobacter calcoaceticus Acinetobacter haemolyticus Acinetobacter johnsonii Acinetobacter junii Acinetobacter lwoffii Acinetobacter schindleri Acinetobacter ursingii Actinobacillus equuli Actinobacillus suis Actinomyces hongkongensis Actinomyces meyeri Actinomyces naeslundii Actinomyces radicidentis Actinomyces radingae Aerococcus sanguinicola Aerococcus urinae Aerococcus viridans Aeromonas caviae Aeromonas hydrophila Aeromonas media Aeromonas salmonicida Aeromonas schubertii Aeromonas veronii Afipia broomeae Afipia clevelandensis Afipia felis Aggregatibacter actinomycetemcomitans Aggregatibacter aphrophilus Alcaligenes faecalis Alistipes finegoldii Alistipes shahii Amycolatopsis orientalis Arcanobacterium haemolyticum Arcobacter butzleri Azohydromonas lata Azospirillum brasilense Bacillus cereus Bacillus coagulans Bacillus megaterium Bacillus mycoides Bacillus pumilus Bacillus subtilis Bacillus thuringiensis Bacteroides fragilis Bacteroides ovatus Bacteroides thetaiotaomicron Bacteroides vulgatus Bartonella bacilliformis Bartonella clarridgeiae Bartonella henselae Bartonella quintana Bartonella schoenbuchensis Bartonella vinsonii Bifidobacterium adolescentis Bifidobacterium angulatum Bifidobacterium bifidum Bifidobacterium dentium Bifidobacterium longum Bifidobacterium pseudocatenulatum Bordetella bronchiseptica Bordetella hinzii Bordetella holmesii Bordetella parapertussis Bordetella pertussis Bordetella trematum Borrelia miyamotoi Brachyspira pilosicoli Bradyrhizobium elkanii Brevundimonas diminuta Brucella abortus Brucella melitensis Brucella microti Brucella suis Burkholderia ambifaria Burkholderia cenocepacia Burkholderia cepacia Burkholderia gladioli Burkholderia mallei Burkholderia multivorans Burkholderia pseudomallei Burkholderia pyrrocinia Burkholderia stabilis