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Table S5. Codon usage patterns of Pseudomonas putida ... - PLOS

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Table S5. Codon usage patterns of Pseudomonas putida KT2440 and bacteriophages pf16 and phiPMW: Percentages corresponding to codons recognised.

Table S5. Codon usage patterns of Pseudomonas putida KT2440 and bacteriophages pf16 and phiPMW: Percentages corresponding to codons recognised by phage encoded tRNAs are highlighted in bold and underlined. Codon

Percentage of Pseudomonas putida Codons

Percentage of pf16 Codons

Percentage of phiPMW Codons

pf16 Codons Descending Order (%)

phiPMW Codons Descending Order (%)

CTG

7.16

1.87

2.22

2.77

3.00

GCC

5.67

1.67

0.84

2.70

2.67

GGC

4.89

1.62

0.73

2.56

2.45

GAC

3.65

1.77

1.45

2.30

2.38

GTG

3.62

1.75

1.61

2.28

2.34

CGC

3.60

1.54

0.71

2.25

2.29

CAG

3.51

2.56

1.59

2.13

2.22

ATC

3.44

1.70

1.71

2.10

2.15

ACC

3.10

1.74

1.61

2.08

2.12

GAG

2.96

1.38

1.49

2.00

2.12

GCG

2.83

1.83

0.67

1.98

2.05

TTC

2.82

2.25

2.12

1.90

2.05

GAA

2.71

1.77

2.38

1.87

2.04

AAG

2.45

1.60

2.34

1.87

2.02

CCG

2.43

1.11

0.76

1.86

1.98

AAC

2.33

1.86

2.05

1.86

1.94

AGC

2.31

2.13

1.31

1.86

1.85

ATG

2.31

1.77

2.12

1.85

1.84

GTC

2.14

1.87

1.16

1.84

1.83

TAC

1.83

1.30

1.48

1.83

1.80

GAT

1.66

1.90

1.84

1.81

1.78

TTG

1.64

2.70

2.45

1.81

1.77

GGT

1.64

1.71

2.04

1.77

1.76

CAC

1.55

1.86

1.60

1.77

1.73

CTC

1.49

1.44

1.29

1.77

1.72

TGG

1.44

1.86

1.85

1.75

1.71

TCG

1.39

1.81

1.18

1.74

1.71

GCA

1.37

1.85

1.80

1.72

1.70

CGT

1.27

1.45

1.29

1.71

1.65

GCT

1.21

1.84

1.76

1.70

1.61

GGG

1.17

0.98

0.87

1.69

1.61

CCC

1.14

0.90

0.76

1.67

1.60

CAA

1.09

1.66

3.00

1.66

1.59

CGG

1.03

1.24

0.71

1.66

1.58

AAA

0.99

0.90

2.15

1.63

1.50

ATT

0.97

0.62

1.83

1.62

1.49

ACG

0.89

1.69

1.19

1.60

1.48

TCC

0.87

1.07

1.14

1.54

1.46

TGC

0.86

2.10

1.50

1.54

1.45

CAT

0.81

1.72

1.73

1.50

1.33

GTA

0.75

1.50

1.94

1.46

1.31

GTT

0.75

2.08

1.98

1.45

1.31

TTT

0.73

1.19

1.46

1.44

1.29

CTT

0.73

2.30

2.02

1.40

1.29

TAT

0.72

0.57

1.23

1.38

1.25

CCA

0.71

1.98

1.71

1.30

1.23

AAT

0.67

0.63

1.78

1.29

1.19

CCT

0.60

1.46

1.02

1.24

1.18

AGT

0.52

1.66

1.77

1.19

1.18

ACT

0.47

1.40

1.72

1.13

1.16

ACA

0.36

1.54

2.29

1.12

1.14

CGA

0.34

2.00

1.11

1.11

1.14

GGA

0.33

1.13

1.31

1.07

1.11

TCA

0.30

2.77

2.05

0.98

1.03

CTA

0.27

0.56

1.03

0.90

1.02

TCT

0.27

1.29

1.58

0.90

0.87

AGG

0.23

1.63

1.25

0.90

0.84

ATA

0.21

0.78

1.14

0.78

0.77

TGT

0.21

1.81

1.70

0.63

0.76

TGA

0.20

2.28

2.67

0.62

0.76

TTA

0.15

0.56

1.18

0.57

0.73

AGA

0.12

1.12

1.65

0.56

0.71

TAA

0.07

0.52

1.33

0.56

0.71

TAG

0.04

0.90

0.77

0.52

0.67