Dec 14, 2016 - on the Variable Importance in Projection (VIP) score of greater than ... 110 metabolites (Supplemental Table T1) that cover 42 metabolic ..... The samples were injected onto an Agilent reversed phase Eclipse Plus C18 column.
related transcription factor 1 (FREAC1), c-src, insulin- like growth factor II precursor, nonhistone chromosomal protein HMG-14, interleukin-9 receptor, and A-raf.
Dec 23, 2016 - main host wheat is economically important stage and has potential to ... analysis of gene expression (Chandra et al., 2016), and RNAseq. (Zhang et al. .... Trinity groups transcripts onto clusters based on shared sequence content .....
tools. Multimedia applications demand both high throughput performance and ... supports detailed, non-intrusive observation and performance monitoring.
Aug 7, 2002 - Laboratories, Whitchurch, Cardiff, CF14 7YT, UK and 3Division of Respiratory Medicine, Institute for Lung Health, University of Leicester ...
Jun 1, 2018 - Genevieve Dewar,6 Peter William Griffith,1 Alexander Mörseburg,1 ... Yali Xue,13 Chris Tyler-Smith,13 Manjinder S. Sandhu,13 Joseph G.
Evolutionary Biology, University of California, Los Angeles, CA 90095, USA, **La Kretz Center for California Conservation. Science, Institute of .... enriched prior to NGS using well-established PCR tech- niques or ..... assignment analyses in the pr
Jun 1, 2018 - Genevieve Dewar,6 Peter William Griffith,1 Alexander Mörseburg,1 John ... Susan L. Kerr,10 Phillip Endicott,11 John Lindo,12 Marc Haber,13.
Abstract. This work presents the parallel storage device profiling tool SeRRa. ... about performance from HDDs do not hold when using SSDs and RAID arrays, and dif- .... The tool, implemented on Python, is open source and available at.
Jun 3, 2015 - In wheat, 605 miRNAs were identified from developing grains at 5, 15, 25, and 30 ... identified 59 miRNA families in two seed developmental stages of japonica species ... generated from a single precursor in maize. Finally, our ... Univ
Jul 25, 2018 - of gene expression, siRNAs regulate gene transcription through both guiding DNA. 69 ... siRNA transcripts by specific miRNAs, followed by conversion into dsRNAs by RDR ...... the Arabidopsis ARF2, ARF3, and ARF4 genes.
Nov 11, 2014 - survival and axonal regeneration in the pseudounipolar dorsal root ganglia (DRG) ... either type of nerve lesion within the same neuron. A CpG ...
are equivalent to interactive Turing machines with advice, but they stand out ... positive, non-decreasing function g, there is a translation that can be realized by a ... model of computation, so are sequences of automata, and hence lineages, .....
Jul 18, 2011 - Results: We performed a parallel study of microRNA and gene expression ... formed a parallel comparison of miRNA and mRNA profiling.
a School of Computer, China University of Geosciences (Wuhan), 388 Lumo Road, Wuhan 430074, China b Faculty of ...... experimental results were computed on a notebook computer with .... Berchtold, S., Keim, D.A., Kriegel, H.P., 1996.
Nov 9, 2010 - Paul Lacaze,1* Thorsten Forster,1 Alan Ross,1 Lorraine E. Kerr,2 Eliane ...... Chee, M., S. A. Rudolph, B. Plachter, B. Barrell, and G. Jahn. 1989.
Nov 9, 2010 - Campus, Mayfield Road, Edinburgh, United Kingdom2; Department of ...... WT 066784/Z/02/Z (to P.G.), Unity through Knowledge Fund grant no.
Texas Advanced Computing Center ..... host : i101-309/x86_64_Linux mpi_tasks : 32 on 2 nodes ... IPM: Integrated Perform
cardiac endothelial cells, and other cell types that constitute a func- tional heart. In addition, extrinsic signaling molecules, such as bone ... RNAs, termed microRNAs (miRNAs) have been recognized as key regulators ...... (worksheet-cluster distri
channels, Kcna5 and Kcnb1, were very lowly expressed in all developmental stages, but induced in. 26 both young and old adult hearts (Figure 2I). In contrast ...
Theodora Sideri,* Charalampos Rallis,* Danny A. Bitton,* Bruno M. Lages,* ...... Delaney, J. R., C. J. Murakami, B. Olsen, B. K. Kennedy, and M. Kaeberlein,.
Apr 16, 2014 - Down-regulation of miR-1246 induced significant changes in DLG3 expression ... Vero cells indicated that hsa-miR-296-5p inhibited HEV71.
Apr 28, 2009 - examples, Smarca4 of cluster 1, an important component of an NF-κB-associated complex, which can regulate bfl-1 expression [25], showed an ...
Jul 10, 2012 - Citation: Ryan MM, Ryan B, Kyrke-Smith M, Logan B, Tate WP, et al. (2012) ..... PSD95 and is recruited to the PSD in response to NMDA receptor ... network may reflect LTP-responsive cytoskeletal reorganisation. [39].
The upper part shows all transcriptional regulators predicted to target Pparg gene ... H3K4me3 were not included in the above analysis due to lower number of ...
Gerard et al.: Time-series epigenomic profiles of mesenchymal differentiation
Temporal enhancer profiling of parallel lineages identifies AHR and GLIS1 as regulators of mesenchymal multipotency Deborah Gérard, Florian Schmidt, Aurélien Ginolhac, Martine Schmitz, Rashi Halder, Peter Ebert, Marcel H. Schulz, Thomas Sauter and Lasse Sinkkonen
Supplementary Information
Gerard et al.: Time-series epigenomic profiles of mesenchymal differentiation
Supplementary Figures
Supplementary Figure S1: Differentiation of ST2 bone marrow stroma progenitors towards adipocytes and osteoblasts. (A-C) Prior to high-throughput sequencing, the differentiation of ST2 cells towards adipocytes and osteoblasts was controlled using RT-qPCR analysis of the known marker genes of both differentiations and by visual inspection of cell morphology and stainings. Time-series RT-qPCR profiles of three adipocyte markers genes (Pparg, Cebpa and Lpl) and three osteoblast markers genes (Runx2, Sp7 and Bglap) are shown for (A) adipocyte differentiation and (B) osteoblast differentiation. The statistical significance for RT-qPCR measurements compared to the value on D0 was determined by two-tailed Student’s t-test. *=p
