QC Report - Agilent Technologies : 2 Color CGH Grid ...

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QC Report - Agilent Technologies : 2 Color CGH. Date. Thursday, March 17, 2016 - 07:50 Sample(red/green). /Agilent Euro Male. User Name. Administrator FE ...
QC Report - Agilent Technologies : 2 Color CGH Date User Name Image Protocol Grid Saturation Value DyeNorm List No of Probes in DyeNorm List

Thursday, March 17, 2016 - 07:50 Administrator US10023759_252983031269_S01 [1_2] CytoCGH_0209_4x_Mar14 (Read Only) 029830_20100916 65528 (r), 65528 (g) NA NA

Sample(red/green) FE Version BG Method Multiplicative Detrend Dye Norm

/Agilent Euro Male 2.9.2.4 Detrend on (NegC) True Linear

Evaluation Metrics for CytoCGH_QCMT_4x_Mar14 Excellent (6) ; Good (2) ; Evaluate (5) Metric Name Value Excellent

Spot Finding of the Four Corners of the Array

IsGoodGrid AnyColorPrcntFeatNonU... DerivativeLR_Spread gRepro g_BGNoise g_Signal2Noise g_SignalIntensity rRepro r_BGNoise r_Signal2Noise r_SignalIntensity RestrictionControl LogRatioImbalance

Grid Normal Outlier Numbers with Spatial Distribution 1064 rows x 170 columns

1.00 0.77 0.77 0.12 4.57 119.08 544.11 0.49 3.08 9.76 30.03 0.89 -11.87

>1 400 -0.26 to 0.26

Good NA 1 to 5 0.20 to 0.30 0.10 to 0.20 10 to 20 50 to 100 200 to 400 0.10 to 0.20 10 to 20 50 to 100 200 to 400 0.80 to 1 (-0.75 to -0.2...

• Excellent • Good • Evaluate Histogram of Signals Plot (Red)

•Red FeaturePopulation •Green FeaturePopulation Feature Non Uniform Population

•Red Feature NonUniform •Green Feature NonUniform

Histogram of Signals Plot (Green)

Red

Green

Any

%Outlier

1393 150

24 88

1397 228

0.77 0.13

Evaluate 5 >0.30 0.20 >20

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