SCOPE motif finder Results (Job #59816)

Version 2.1.0 About SCOPE... Glossary species: Arabidopsis thaliana TAIR6

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Video Help search type: intergenic

Top 6 Results from SCOPE: Consensus Sequence

Count

(Caveat)

Sig Value (What is this?)

tccatsccaa atgttcgtg ggattggcatg ctgcagatac agtgctgca atcttccgc

3 3 2 2 2 2

Coverage

(What is this?) (What is this?)

2.0 3.2 1.1 0.5 -2.2 -2.6

100.0% 100.0% 66.7% 66.7% 66.7% 66.7%

Range of motifs to display:

Most significant motifs are drawn last and may hide less significant motifs. Need to get ahold of the actual sequences or identify flanking regions? Try the Regulatory Sequence Analysis Tools Homepage. Copyright © 2004-2013, all rights reserved, Trustees of Dartmouth College Developed in the lab of Prof. Robert H. Gross under a grant from the National Science Foundation (USA) Comments or suggestions? Email us.

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FAQs

Publications


Definitions

Detailed analysis of consensus sequence tccatsccaa:

Both strands used to compute Sig Value. PWM: a c g t

t

c

c

a

t

s

c

c

a

a

0

0

0

3

0

0

0

0

3

3

0

3

3

0

0

1

3

3

0

0

0

0

0

0

0

2

0

0

0

0

3

0

0

0

3

0

0

0

0

0

tccatsccaa locations:

Site tccatgccaa tccatcccaa tccatgccaa

Strand Location Gene -288 to -297 AT1G32940 -341 to -350 AT1G32950 -281 to -290 AT1G32960 Genes in search that contain motif tccatsccaa: AT1G32940; AT1G32950; AT1G32960 Genes in search that do not contain motif tccatsccaa: none

Copyright © 2004-2013, all rights reserved, Trustees of Dartmouth College Developed in the lab of Prof. Robert H. Gross under a grant from the National Science Foundation (USA) Comments or suggestions? Email us.


FAQs

Publications


Definitions

Detailed analysis of consensus sequence atgttcgtg:


a

t

g

t

t

c

g

t

g

3

0

0

0

0

0

0

0

0

0

0

0

0

0

3

0

0

0

0

0

3

0

0

0

3

0

3

0

3

0

3

3

0

0

3

0

atgttcgtg locations:

Site atgttcgtg atgttcgtg atgttcgtg

Strand Location Gene -414 to -422 AT1G32940 + -72 to -64 AT1G32950 + -543 to -535 AT1G32960 Genes in search that contain motif atgttcgtg: AT1G32940; AT1G32950; AT1G32960 Genes in search that do not contain motif atgttcgtg: none



FAQs

Publications


Definitions

Detailed analysis of consensus sequence ggattggcatg:


g

g

a

t

t

g

g

c

a

t

g

0

0

2

0

0

0

0

0

2

0

0

0

0

0

0

0

0

0

2

0

0

0

2

2

0

0

0

2

2

0

0

0

2

0

0

0

2

2

0

0

0

0

2

0

ggattggcatg locations:

Site ggattggcatg ggattggcatg

Strand Location Gene + -300 to -290 AT1G32940 + -293 to -283 AT1G32960 Genes in search that contain motif ggattggcatg: AT1G32940; AT1G32960 Genes in search that do not contain motif ggattggcatg: AT1G32950



FAQs

Publications


Definitions

Detailed analysis of consensus sequence ctgcagatac:


c

t

g

c

a

g

a

t

a

c

0

0

0

0

2

0

2

0

2

0

2

0

0

2

0

0

0

0

0

2

0

0

2

0

0

2

0

0

0

0

0

2

0

0

0

0

0

2

0

0

ctgcagatac locations:

Site ctgcagatac ctgcagatac

Strand Location Gene + -266 to -257 AT1G32940 + -263 to -254 AT1G32960 Genes in search that contain motif ctgcagatac: AT1G32940; AT1G32960 Genes in search that do not contain motif ctgcagatac: AT1G32950



FAQs

Publications


Definitions

Detailed analysis of consensus sequence agtgctgca:


a

g

t

g

c

t

g

c

a

2

0

0

0

0

0

0

0

2

0

0

0

0

2

0

0

2

0

0

2

0

2

0

0

2

0

0

0

0

2

0

0

2

0

0

0

agtgctgca locations:

Site agtgctgca agtgctgca

Strand Location Gene + -1075 to -1067 AT1G32940 + -267 to -259 AT1G32960 Genes in search that contain motif agtgctgca: AT1G32940; AT1G32960 Genes in search that do not contain motif agtgctgca: AT1G32950



FAQs

Publications


Definitions

Detailed analysis of consensus sequence atcttccgc:


a

t

c

t

t

c

c

g

c

2

0

0

0

0

0

0

0

0

0

0

2

0

0

2

2

0

2

0

0

0

0

0

0

0

2

0

0

2

0

2

2

0

0

0

0

atcttccgc locations:

Site atcttccgc atcttccgc

Strand Location Gene + -616 to -608 AT1G32940 + -306 to -298 AT1G32960 Genes in search that contain motif atcttccgc: AT1G32940; AT1G32960 Genes in search that do not contain motif atcttccgc: AT1G32950
