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Table S2. Overview of sequence motifs - PLOS

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Recombination hotspot. CCNCCNTNNCCNC. 10. -. Retrotransposon. TCATACACCACGCAGGGGTAGAGGACT. -. -. Translin-binding site 1. ATGCAG. 34. 5.

Table S2. Overview of sequence motifs Number of sequences Motif name

Motif sequence

Random control population (n=500)

Observed breakpoint regions (n=48)

X-element E. coli

GCTGGTGG

1

1 1

Ade6-M26

ATGACGT

-

ARS consensus S. cerevisiae

WTTTATRTTTW

4

1

ARS consensus S. Pombe

WRTTTATTTAW

3

2

Consensus SAR 1

AATAAAYAAA

5

2

Consensus SAR 2

TTWTWTTWTT

46

7

Consensus SAR 3

WADAWAYAWW

109

14 10

Consensus SAR 4

TWWTDTTWWW

120

Deletion hotspot consensus

TGRRKM

385

31

DNA polymerase arrest site

WGGAG

285

24

DNA polymerase a frameshift hotspot 1

TCCCCC

32

1

DNA polymerase a frameshift hotspot 2

CTGGCG

7

-

DNA polymerase b frameshift hotspot 1

ACCCWR

138

17

DNA polymerase a/b frameshift hotspot 1

ACCCCA

42

7

DNA polymerase a/b frameshift hotspot 2

TGGNGT

142

15

D. Topoisomerase 2 consensus

GTNWAYATTNATNNR

2

3

Heptamer recombination signal

CACAGTG

23

Human hypervariable minisatelliets sequence 1

GGAGGTGGGCAGGARG

-

-

Human hypervariable minisatelliets sequence 2

AGAGGTGGGCAGGTGG

-

-

Human minisatelliets core sequence

GGGCAGGARG

1

-

Human replication origin consensus

WAWTTDDWWWDHWGWHMAWTTDHWGWHMAWTT

-

-

Human minisatellites conserved sequence/X-like element

GCWGGWGG

17

3

Ig heavy chain class switch repeat 1

GAGCT

116

6

Ig heavy chain class switch repeat 2

GGGCT

99

10

Ig heavy chain class switch repeat 3

GGGGT

87

12

Ig heavy chain class switch repeat 4

TGGGG

134

15

Ig heavy chain class switch repeat 5

TGAGC

130

15

LTR-IS motif

TGGAAATCCCC

-

-

Mariner transposon-like element

GAAAATGAAGCTATTTACCCAGGA

-

Murine MHC recombination hotspot

CAGRCAGR

25

2

Murine parvovirus recombination hotspot

CTWTTY

239

20

Nonamer recombination signal

ACAAAAACC

2

-

Pur-binding site

GGNNGAGGGAGARRRR

-

-

CCNCCNTNNCCNC

10

-

Recombination hotspot Retrotransposon

TCATACACCACGCAGGGGTAGAGGACT

-

Translin-binding site 1

ATGCAG

34

5

Translin-binding site 2

GCCCWSSW

47

4

Vaccinia topoisomerase I consensus

YCCTT

257

16

Vaccinia topoisomerase II consensus

RNYNNCNNGYNGKTNYNY

2

-

AAGGGAGAARGGGTATAGGGRAAGAGGGAA

-

-

XY32 homopurine-pyrimidine H-palindrome motif