Alignment Report of Align CPSF3.meg ClustalW (Slow ... - PLOS
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Bs EE IGQRLF APAQQLNSATAT-- -----GPQ NAPRICEPY Q Q MODE PVH DVNV QGI SQ VTW LNA 229. UA CO. I. LLLLL. L LLL. TL L L. Z ITT TIL. LLLL LLL.
FK H. HSPAN2. 279 KR Y H R A M K Y S K G - L E - - - - - - D N F E S R N - A. TriadPAN2. 470 I N K Y E P P A Y S R P L I S. FT P F. ScPAN2. 394 H G G A SGL ...
Oct 26, 2011 - TILL TILL IT TILL TVILLI II TL LLL LLL LLL. TILL VI I II III TIL IT L II TIL I TILL IT. Till I zi. III II II. IL L L L H LLL. TIL JILI. ILI. HII. IL L LL LL LLL.
Minimap efficiently finds approximate alignments between contigs and reads. These alignments are local (not semi-global) and only provide start/end.
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Alignment Report of Align CPSF3.meg ClustalW (Slow ... - PLOS
LILI. TL II n I TIL. 1. |. L. 1. T. I. 2. HIT. 1 1. TILL. TILL. LL. >>> O I I. V I III. TL II. II. TL II. TL. H. I CM LVE NNI F 220. LAM MIE AGV L 175. L AL M/D AGM L 200.
36
Pfalc Hsap Tbruc Tcongo Tvivax
-----------------------------------MSNINIVCLGGASEVGRSCVIIECDKTSVMLDCGIHPAFMGIGCLPIYDA ---------------MSAIP-----AE-------ESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDL MFSHAAYSAPGVHVLDSSSPRHLAAGPQPAAAPPSTDEVEILPIGSGGEVGRSCVVVRYKGRSVMLDCGNHPAKSGLDSLPFFDS MFSSAANNASGVYLNDGATP-HVAVGHSPAVTQASTDEVEILPIGSGGEVGRSCIVVRYKGRSVMLDCGNHPAKSGLDSLPFFDS -------------MPDSSAMYFTPTG----AASAPVDEVEILPIGSGGEVGRSCVVVRYKGRSVMLDCGNHPAKSGLDSLPFFDS Y
YTGDYSREIDRHIPIAEIPNIDVHVLICEGTYGIKVHDDRKKREIRFLNILTSMINNKGKVLLPVFALGRAQELLLILEEHWDKN Y YTGDFSRQEDRHLMAAEIPNIKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNH YTGDFSRVPDRHLLGAEVPPYSPDILIAESTNGIRELESREERESLFTTWVHDVVKGGGRCLVPVFALGRAQELLLILEEYWEAH YTGDFSRVPDRHLLGAEVPPYSPDILIAESTNGIRELESREERETLFTTWVHDVVKGGGRCLIPVFALGRAQELLLILEEYWEAH --------------------------------------------------------------------------------YWEAH C C
IFNIIASDKKSGVILTGYTVKGTLADELKTEP-EFVTINDKVVKRKCR-FEQISFSAHSDFNQTKTFIEKL-KCPNVVLVHGDKN LFESWCTDKRNGVIIAGYCVEGTLAKHIMSEPEEITTMSGQKLPLKMS-VDYISFSAHTDYQQTSEFIRAL-KPPHVILVHGEQN LFERWCGDKRNGIIVAGYCVDGTIAKDILSKPREITKPDGKVLPLRMRTIQSVSFSAHSDGRQTRDFIQALPKTKHVILVHGNVG LFERWCGDKRNGIIVAGYCVDGTIAKEILSKPKEITKPDGKVLPLRMRTVQSVSFSAHSDGRQTRDFIQALPNTKHVILVHGNIG LFEKWCGDRRNGIIIAGYCIDGTIAKDVLSKPREITKPDGKVLPLRMRTIQSVSFSAHSDGRQTRDFIQALPKTQHVILVHGNAG N I SA K N
KEY Conserved chemical group Identical Zinc binding Residue change linked to AN3661 resistance in Toxoplasma Interaction with His 396 (human) = 424 T. brucei Residue change linked to AN3661 resistance in Plasmodium Interaction with phosphate Residue number in the Plasmodium falciparum sequence / in T. brucei sequence In a structural model, R290 and Y252 interact with the carboxylate of AN3661 Pfalc- Plasmodium falciparum Hsap- Homo sapiens Tbruc- Trypanosoma brucei Tcongo- Trypanosoma congolense
