Stage Sequence file Mapping file 1Reconstituting performed ... - PLOS

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CLUSTAL 2.1 MULTIPLE SEQUENCE ALIGNMENT File - PLOS

I TI TI TI TI TI TI TI TI TIL. | | | | | | | | | | | | | | | | | .... IT I I I I TIL LITT TILL TIL. I TI TI TI I. | IT IT IT .... Î¤Î Î Î Î Î Î Î Î Î Î Î Î Î Î Î Î |. Î Î Î Î Î Î Î Î Î Î Î Î Î Î Î¤ Î. IT I I I I. TIL TI

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AA AGC G G CGT G CTTACACAT G CAAGT C G A AC G G A AA GGTCT CT T C G G AG A CAC T C G A GT G GC G AAC G G GT G AGT AACA C GT G G G CA ...

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407 (s). -4.3 (57/58). 410 (s). -4.3 266/267. 17 (118, 251, 684,. 854). AAACAG. -1.47. -4.2 (251). -3.5 (107). 18-19 (w) .... -4.3 (-5.62) 412/413. -4.2 (-5.62) 269/270.

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Stage Sequence file Mapping file 1Reconstituting performed ... - PLOS

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all_s60_c01_cd_tr400_s30_c08_cd.mapping. 5A. all_s60_c01_cd_tr400_s30_c08_Good.fa all_s60_c01_cd_tr400_s30_c08_cd.mapping. QIIME. 1B seqs.fna.

Stage

Sequence file

Mapping file

1A

.fa

N/A

2A

_s60_c01_cd.fa

_s60_c01.mapping

3A

_s60_c01_cd_tr400.fa

_s60_c01.mapping

4A

all_s60_c01_cd_tr400_s30_c08_cd.fa

all_s60_c01_cd_tr400_s30_c08_cd.mapping

5A

all_s60_c01_cd_tr400_s30_c08_Good.fa

all_s60_c01_cd_tr400_s30_c08_cd.mapping

1B

seqs.fna

N/A

2B

prefix_dereplicated.fasta

prefix_mapping.txt

3B1, 4B1,2

singletons.fasta, centroids.fasta

denoiser_mapping.txt

1C

.flow.fasta

N/A

2C

.flow.shhh.fasta

.flow.shhh.names

3C

.flow.shhh.trim.fasta

.flow.shhh.trim.names

4C, 5C3

.flow.shhh.trim.shhh.fasta

.flow.shhh.trim.shhh.names

1D

seqs.fna

N/A

2D

seqs.unique.slp.unique.fa

seqs.unique.slp.names

_all_tags.seqOut

N/A

AmpliconNoise

QIIME

mothur

SLP

Acacia 1E

Reconstituting performed by inflate_denoiser_output.py. Chimeric reads excluded based on output from ChimeraSlayer. 3Chimeric reads excluded based on output from UCHIME. 1 2