UGT1A1 Maximum Likelihood phylogenetic tree - Plos
Recommend Documents
multiple maximum likelihood points may exist for certain phylogenetic trees, most existing phylogenetic construction programs only produce a single best tree.
S2 Fig. Maximum likelihood phylogenetic trees of AP2/ERF proteins and alignment of the amino acids of R1 and R1 repeats in representative AP2/ERF genes.
14514(M54VND6). 80(as17). 7805(V74ICOII) ...... Name or number in brackets are the real name or number for the sequence. That given by the author. L1. L2.
15645(I300Tcytb) ...... our code (for example, 4(55) means Howell's article (4 is the code for this article) and 55 is the number of the sequence in the article).
not only show that a simple two-partition model resolves the phylogeny better than a one-partition model but also ... quences (e.g., Seo and Kishino 2008, 2009; Anisimova and .... multiple partitions fitted the best for all MSAs in L60p30. In.
Maximum likelihood. 1. Maximum likelihood. In statistics, maximum-likelihood
estimation (MLE) is a method of estimating the parameters of a statistical model.
UGT1A1 Maximum Likelihood phylogenetic tree Outgroup g p Chicken Rhesus macaque Crab-eating macaque Olive baboon Human Chimpanzee Norway rat House mouse Cattle Red fox
Carnivora families
Maned wolf
Canidae
Red wolf Domestic dog Asiatic black bear
Phocidae
Polar bear Raccoon
Suborder
Caniformia
Domestic ferret
Otariidae
Black-footed ferret Harbor seal Northern elephant seal Northern fur seal
Ursidae Procyonidae Mustelidae
New Zealand sea lion Southern fur seal African civet Binturong Indian mongoose
Viverridae Herpestidae
Aardwolf
Order
Spotted hyena Striped hyena
Carnivora
Hyenidae
Brown hyena Canada lynx Leopard cat Margay Tigrina
UGT1A6 Maximum Likelihood phylogenetic tree Outgroup g p Chicken Chimpanzee Human Sumatran orangutan Olive baboon Crab-eating macaque Rabbit Norway rat Mouse UGT1A6a Mouse UGT1A6b Pig Sheep Cattle Horse UGT1A6a Horse UGT1A6b Horse UGT1A6c Red fox Maned wolf Domestic dog Red wolf Raccoon Asiatic black bear Polar bear Harbor seal Northern elephant p seal Lesser [red] panda Domestic ferret Black-footed ferret Indian mongoose Striped hyena Brown hyena Aardwolf Spotted hyena Binturong African civet Domestic cat Leopard cat Cheetah Puma Florida panther Leopard African lion Snow leopard Tiger Jaguar Asiatic golden cat Canada lynx Bobcat African golden cat Serval Margay Geoffroy's cat Tigrina
Norway rat M UGT1A6a Mouse UGT1A6 Mouse UGT1A6b Pig Cattle Sheep
Horse UGT1A6a Horse UGT1A6b Horse UGT1A6c Red fox 0.59 Maned wolf 0.9 Domestic dog Red wolf Northern elephant seal Harbor seal Lesser (red) panda 1 Black-footed ferret Domestic ferret Raccoon 1 Polar bear Asiatic black bear Binturong African civet Indian mongoose Spotted hyena 1 Aardwolf 1 Brown hyena Striped hyena 1 African golden cat Serval 1 Margay 0.99 Geoffroy's cat Tigrina 0.66 Asiatic golden cat 0 98 Canada lynx 0.98 1 Bobcat 1 Domestic cat 0.98 Leopard cat 0.78 Cheetah 1 Puma Florida panther Tiger 1 Jaguar Snow leopard 0.92 African lion Leopard
E
UGT1A1 Maximum Parsimony phylogenetic tree Outgroup Chicken 100
100 99 100
97
Norway rat Mouse Chimpanzee Human Rhesus macaque Olive baboon Crab-eating macaque Cattle
69
100
94 70
85 93 89
51 83 96
51
Red fox Maned wolf 71 Red wolf Domestic dog Northern elephant seal Harbor seal Southern fur seal New Zealand sea lion Northern fur seal 100 Asiatic black bear Polar bear Raccoon 100 Domestic ferret Black-footed ferret African civet
94 62 99
76
69
99
0.05
Binturong Indian mongoose Aardwolf Spotted hyena 96 Brown hyena Striped hyena
Canada lynx Leopard Jaguar 81 African lion Snow leopard Tiger African golden cat A i ti golden Asiatic ld catt Serval Domestic cat Leopard cat Margay 68 Tigrina Geoffroy's cat Bobcat Cheetah Puma Florida panther
F
UGT1A6 Maximum Parsimony phylogenetic tree Outgroup Chicken 100 100
Norway rat Mouse UGT1A6b Mouse UGT1A6a Rabbit Crab-eating macaque Olive baboon Sumatran orangutan 97 97 Chimpanzee Human 99
99 68
81 95
Horse UGT1A6c Horse UGT1A6b Horse UGT1A6a Pig
100 100
100
73 54
64
93
99
0.05
Red fox Maned wolf 61 Red wolf Domestic dog Lesser (red) panda Raccoon 100 Asiatic black bear Polar bear 99 Harbor seal Northern elephant seal 100 Domestic ferret Black-footed ferret 92 African civet Binturong Indian mongoose 94 Aardwolf 100 99 Striped hyena Brown hyena Spotted hyena Asiatic golden cat 63 Bobcat Canada lynx 93 Serval 100 African golden cat 93 Margay 88 Tigrina Geoffroy's cat 60 Leopard African lion 94 Snow leopard Jaguar Tiger 95 Leopard p cat 74 Domestic cat 100 Florida panther 51 Puma Cheetah
