program. (https://pypi.python.org/pypi/cutadapt) [3] is well suited for this task because it provides a ... profiling of off-âtarget cleavage by CRISPR-âCas nucleases.
Model (no. parameters). LRT test. 2âl df p value l Ï (dN/dS). Parameter estimate(s). Positively selected sites. (BEB) (pp > 0.8). M0 (one-ratio) (1). M3 vs. M0.
Memorial Sloan-Kettering Cancer Center. Registered Nurse Radiation Safety Questionnaire. Cognitive Test: Select the one correct response to each question.
The algorithm was implemented in the Python [30] and FORTRAN .... Patil AP, Gething PW, Piel FB, Hay SI (2011) Bayesian geostatistics in health ... Fonnesbeck C, Huard D, Patil AP (2008 ) PyMC 2.0 User's Guide: installation and tutorial.
timestampOn(verbose). Command used to define the Affymetrix chip type: chiptype
Apr 20, 2011 - alization software package, currently available for Windows, OS X, Linux, and. 1 ... The virtual appliance hosting TESeeker will then boot.1 As ...
Transcription Factor Name (Matrix ID) ... Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) ... Phospholipid transfer protein.
Additional File 4 â Prediction accuracy achieved by different features for ... trained on different feature types, namely the absolute intensity features (AI), relative ...
Additional file A8: Describing uncertainty in predicted PfPR2-10, PfEIR and PfRc ... the posterior distribution of PfPR2-10 values (panel Ai) is tightly distributed ...
Randomized trial of 3-dose regimens of tafenoquine (WR238605) versus low-dose primaquine for preventing Plasmodium vivax malaria relapse.
Sulfotransferase family 1A, phenol-preferring, member 1. CDNA sequence BC038479. 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 1. Neuregulin 4.
PDIA3 protein disulfide isomerase family A, member 3. Cytoplasm peptidase. P18669. PGAM1 phosphoglycerate mutase 1 (brain). Cytoplasm phosphatase.
Editorial Note: Parts of this peer review file have been redacted as indicated to maintain the confidentiality of unpublished data. Reviewers' comments: Reviewer ...
patient population ... 1 subscale (brain cancer related concerns including concentration, memory, seizures, ... JP: Measuring psychological and physical distress in cancer patients: structure and application of the Rotterdam Symptom Checklist.
The Cancer Genome Atlas (TCGA) [9] were downloaded from Broad GDAC Firehose ... miRNAs were available in the TCGA, DBCG and Micma cohorts, and 68 ...
Additional file 2 Additional file 2a. Supplementary methods miRNA and mRNA differential expression in luminal A tumors of COCA cluster 1 versus COCA cluster 4 A wilcoxon rank-‐sum test was applied to identify miRNAs that were differentially expressed between luminal A tumors of COCA cluster 1 vs. COCA cluster 4. The resulting p-‐values were corrected for multiple comparisons using the Benjamini-‐Hochberg FDR [1]. Differentially expressed miRNAs were defined as those with a corrected p-‐value < 0.01 and with an absolute log2 fold change >1. Fold change for each miRNAs was calculated as –log2 of the (non-‐transformed median of luminal A COCA 1)/(non-‐transformed median of luminal A COCA 4).
The expression of the 71 miRNAs was correlated to all genes using Spearman
correlation and genes with correlation >|0.4| were retained, resulting in 1808 unique genes (only the expression of luminal A tumors of COCA cluster 1 and COCA cluster 4 were considered). To further test which of these 1808 genes were also differentially expressed between luminal A tumors of COCA cluster 1 vs. COCA cluster 4, a t-‐test was applied. Genes with a Benjamini-‐Hochberg corrected p-‐value
