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cor=0.998 slope=0.976 n=65 cor=0.98 slope=0.816 n=262 cor=0.995 slope=0.962 n=38 cor=0.94 slope=0.82 n=1 cor=NA slope=2.15. MAF: 5â50%. MAF: 1â5 ...

GTimp vs SSimp (associated SNVs) MAF: 5−50%

MAF: 1−5% n=5714

n=262

10

0 R2: 0.7−1

−10

−20

cor=0.998 slope=0.976

cor=0.995 slope=0.962

n=65

n=38

10

Z (SSimp)

GT imputation quality 1.00 0 R2: 0.3−0.7

0.95 0.90

−10

cor=0.98 slope=0.816

−20

cor=0.94 slope=0.82 n=1

10

0 R2: 0−0.3

−10

cor=NA slope=2.15

−20 −20

−10

0

10

−20

Z (GTimp)

−10

0

10